Gene detail information of Glyur000116s00009246.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 6.00E-110 | O-methyltransferase 1 |
| NR | XP_003626617.1 | 0 | Caffeic acid 3-O-methyltransferase [Medicago truncatula] |
| COG | YP_007130428.1 | 1.00E-34 | O-demethylpuromycin O-methyltransferase [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q9FQY8|COMT1_CAPAN | 3.00E-143 | Caffeic acid 3-O-methyltransferase |
| trEMBL | tr|Q2HTB3|Q2HTB3_MEDTR | 0 | O-methyltransferase, family 2; Dimerisation {ECO:0000313|EMBL:ABD32718.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00116 | 272655 | 288182 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000116s00009246.1 | PF08100.6 | Dimerisation | 50 | 102 | 1.10E-16 |
| Glyur000116s00009246.1 | PF00891.13 | Methyltransf_2 | 123 | 359 | 2.60E-90 |
| Glyur000116s00009246.1 | PF00891.13 | Methyltransf_2 | 452 | 548 | 3.50E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.109 |
| SRR1783600 | control | 48.384 |
| SRR1783602 | moderate drought stress | 47.093 |
| SRR1811619 | moderate drought stress | 46.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.341 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.860 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.273 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.339 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.636 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 138.964 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 141.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.216 |
| SRR2868004 | Drought Stress (root) | 33.557 |
| SRR2967015 | Control (root) | 27.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.828 |
| SRR9715740 | Leaf | 58.036 |
| SRR9715741 | Leaf | 67.440 |
| SRR9715739 | Root | 41.085 |
| SRR9715742 | Root | 42.805 |
| SRR9715743 | Root | 43.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.782 |
| SRR8749028 | MeJA induced 9h | 13.829 |
| SRR8749029 | MeJA induced 9h | 9.355 |
| SRR8749030 | Uninduced | 7.876 |
| SRR8749031 | Uninduced | 3.883 |
| SRR8749032 | Uninduced | 8.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.267 |
| SRR8400027 | Control - Root | 49.587 |