Gene detail

Gene detail information of Glyur000116s00009239.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46870.1	7.00E-47	AP2/B3-like transcriptional factor family protein
NR	XP_003553806.1	3.19E-115	PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1 [Glycine max]
Swissprot	tr\|O82799\|NGA1_ARATH	2.00E-75	B3 domain-containing transcription factor NGA1
trEMBL	tr\|I1NCS4\|I1NCS4_SOYBN	1.00E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G45090.1}

Sequence

Transcript Sequence

>Glyur000116s00009239.1
ATCTAGTACCACTCTCTCTCTCTCTCTCTCGGACGAATGAAACTGGGTTGGAAGAAATTTTCTGCTCCTTTTCCTAGTTGTAAAGAAGCTTCCCCCCCTCCCCTGGGGTAACCATAGTTGTTGGCCAAAACTCACAGGATCACTTTCCCCATCCATCTCGCGCTCATGTTATGCTGCTGTGCAGGTCAACAACAACAACAACAGCGACCTGACCCCGTTTTGAATCCTCCACGGGGTTGTCTTTGGTTTAGGGTTTGGAGCCTTGCAGTGGTTGGTCAAATATATATGAAGGCACCGACTCTTTTAATTTGTGTGCAACTACTACACTAAAGCCTCCCTCGGCACAATCTTTTTGATCCCTCGGCACAATCTGGAATTCAAGGTAGGTAGGTCGGGCACACATACATAATTTCATATGGAGTTGATGCAAGAAGTTAAAGGGTATTCTGATAGCAAGGAAGAGGAGGAGGAAGAGGAAGCAATCACAGGAGAAGACAGCTGCAGGTTACACCAGCAAGACGGGGGTTCGAATTTGGCGAATCACGGGGAGGGAAAGCAGCAGCAGCAGCAGCAGCATCGGGTAGATCATATGATGGAGCTGTCACTGGGGAGGAACAGGGGGGAGGTAGTGCAGGAGGGATCGGCATCGTGTTCGTGTTCAATTAACACATTGATCAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAGAAAGAGCACATGTTCGAGAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGTACGCGGAGAAGTACTTCCCCCTCGACTCCTCCTCCAACGAGAAAGGGCTTCTCCTCAACTTCGAGGACAGGAATGGGAAGGTGTGGCGGTTCAGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGATGCCGGCGACATTGTCTCCTTCCACCGCGGCATCGGTGATTTGTATAGACACAGGCTGTACATTGATTGGAGGAGGAGGCCCCCCAATTTCCCTTCAAACTCATCCCTCCTCCCCAATACCCCTCTCTTCCCCTTCCTTCCCAANAACAACAACAACTTCCACCCCACCAGACTATACCCCTTCCCTTCCACCTCTAGTACTCAATATTTACAACCTCGCTACCCTCCTCCTCATCATCTTCACAACCTCCATTACAATAACAACAATTTCTATACTCTTCACCAACACCAGTACCATGCTCATGACCACCTCAATTCCCTCTATTACCTCACATCCCCAACGCCGCCCGATCAATACTTTCCGGCCCAACAACAAGACAGAGGGAACATTAATAATGTCCCCATGATCATTGATTCTGTGCCCGTTGCTCACCACCACCACCGCGGTGGCGGTGCTGCTGCCCGGCCTGGTAGTAATAATACTACTACCACTACTACTACCGGAAAACGGCTGAGGCTGTTTGGGGTGAACATGGAATGTGCTTCTTCGCCGGCTTCTTCGGCAACAGCAATGCCTAATTCTTCTCTTCAGCGCATGGGTTTGCCCCGTGAAGATCCGCTTTCATCGTCGGCTAGGTTTGGGGATCAGAGAGGGGCAACAACTTCGGTGCTCTTTGATTTGGATCCAACTTCGCAGTACCGCCAGTGATCATCGAGTCATCGATCGACCGAATGAATAAATTGAAGAAGAAGAAGAAGAAGATGTGTAGTGTTTCGAAGTTCATTAGTTGGGCTGTGTTTCGAAGTTCATTAGTTGGGCTGGGTTGGGCTGGGCTGGCCACACTACTCTCTTAATTTTGCAGCATTTTTATTTAATTATTACTCTTTTTTGCCGCCATCAAAGGGAATTACAGCCCCCAAACTTTCTTCATAATTATATTAATCTTCTTTTGATCAGTAATTAGTGTTTAGCTTTTTACTACGTACCTTCTTAGTGTTTTTTTAAGCTGCAAAAAAGCGTTGATTAGCTAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	217027	219570	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009239.1	PF02362.16	B3	105	209	2.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.374
SRR1783600	control	1.302
SRR1783602	moderate drought stress	3.647
SRR1811619	moderate drought stress	3.550

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.250
DRR006520	Root Summer glycyrrhizin high producing strain	0.206
DRR006521	Root Winter glycyrrhizin high producing strain	0.157
DRR006522	Root Winter glycyrrhizin high producing strain	0.192
DRR006523	Root Summer glycyrrhizin low producing strain	0.103
DRR006524	Root Summer glycyrrhizin low producing strain	0.184
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.545
SRR2868004	Drought Stress (root)	0.751
SRR2967015	Control (root)	0.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.827
SRR9715740	Leaf	13.149
SRR9715741	Leaf	19.944
SRR9715739	Root	0.502
SRR9715742	Root	0.956
SRR9715743	Root	0.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.155
SRR8749028	MeJA induced 9h	0.889
SRR8749029	MeJA induced 9h	0.172
SRR8749030	Uninduced	0.735
SRR8749031	Uninduced	0.142
SRR8749032	Uninduced	0.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.215
SRR8400027	Control - Root	0.265