Gene detail

Gene detail information of Glyur000116s00009234

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46890.1	3.00E-112	Protein of unknown function (DUF1295)
NR	AFK35229.1	0	unknown [Lotus japonicus]
COG	YP_006347403.1	1.00E-31	hypothetical protein Theba_2560 [Mesotoga prima MesG1.Ag.4.2]
trEMBL	tr\|I3S4N7\|I3S4N7_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK35229.1}

Sequence

Transcript Sequence

>Glyur000116s00009234.1
GATTAGCTTTTGTGTCATGGGGGCGTGATTGTGTGGGGAGCCCACAAACAGCAGAAAGTGAATCTTTGCATTGGCACCATATTATTTGGAAGAGGTTCTGCTTTTGCTTCCCATAATTTCCATTTGCGAGAGCTATAAATCGGAAGCAAACCATAAAGGAAAGTGAACNCGATCAGATTAGGCAAAGGCGACACCATGGGCAGTGTTAGGAATGTGAAGAACGCCATGATAGCATTCTTGGTTCCTCTTCCCTCCATCCTCCTGTACCTCTCATTAAACTCAGCCACTATTAATGGCAGTGATGATGAGGCAGAGCAAGCAAGGTCAAATGTGTGGACATGGTGGTACTGGTATGAGCACCACCCTCTGCTATTAGCCAATATCCTATTCTTCTTCAACGTCAACTTGCTCTTCTGGGTCATCGGCCTAATCCAATCCAGCCACTGGATGATTGACCCCTATTGGACAGTGATACCAGTGATGCTTGTCCACTACTACTCAGGCCACCCTTTGGCCCAGTATGAGTGGTGGAGGTCGAGGATGGTGATACTGTTGACCTGGGTGTGGAGTGTGAGGCTCATCCATAACTACTTCAGGCGAGAAGAGTGGCAGTGGGGTGCCAGGGAGGACTGGCGTTTCACTGATATGAGCCACCGCTATGGAAGGCACTGGTGGTGGGCTTCCTTCTTCACCATCTACCTCCCTCAGCACTTGTTTCTCATCGCATTATCACTTCCCTTGTATGTCATCCACTCCGTGAATCAGCCCCTCACCATGTGGGACTTGACAGCCACGCTCGTGTCTGCATCTGGCATTGTCATCGCATACTTTGCCGACACTCAGCTCTACAACTTCGTGAGTAGAAACAAGAAGCTTAAGGAACAGGGTAAGCCCGTGGAGGTGCCTGTCCTGGAGAGTGGCCTGTGGTATTATAGTCGGCATCCCAACTACTTTGGGGAGCAGATGTGGTGGTGGGGGCTGGTAGTGTTTGCTTGGAACCTGGGACACGGATCATGGGCCTTCATAGGAGCGNTGGCCAACACCGTGTGTTTGGGTTATGTGACCAAGCTTGTGGAGGAGCGAATGCTGAAACAGGACAACAGGGCGGAGGCATATAGGCTGTATCAGAAGACAACATCCGTGTGGGTGCCTTGGTTCAAGTCCTCTCCTTTAGTTTCAGGACTCAAAAGTAAGAATGCCTGATTGATCATGTTGTTTTGCTGCTCTGCTCAGGGGGGGGCGGGGCGTATTTGAATTGGTTGGGTTGCTTGATTGTACTACTACTAGCGTCGTCTCTGTCTTTTTTATTTTGTTTTGTCTAGTTTGCTGATTATGTGACAGACTCTTTAGAGTTGTCTGTGCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	192657	194188	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009234.1	PF06966.7	DUF1295	73	314	2.10E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.981
SRR1783600	control	16.873
SRR1783602	moderate drought stress	17.092
SRR1811619	moderate drought stress	17.226

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.675
DRR006520	Root Summer glycyrrhizin high producing strain	49.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.239
DRR006522	Root Winter glycyrrhizin high producing strain	0.238
DRR006523	Root Summer glycyrrhizin low producing strain	18.200
DRR006524	Root Summer glycyrrhizin low producing strain	18.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.678

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.374
SRR2868004	Drought Stress (root)	41.364
SRR2967015	Control (root)	42.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.343
SRR9715740	Leaf	0.093
SRR9715741	Leaf	0.215
SRR9715739	Root	27.235
SRR9715742	Root	8.080
SRR9715743	Root	9.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.301
SRR8749028	MeJA induced 9h	0.376
SRR8749029	MeJA induced 9h	0.312
SRR8749030	Uninduced	0.222
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.688
SRR8400027	Control - Root	101.749