Gene detail

Gene detail information of Glyur000116s00009233.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72300.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003520891.1	0	PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]
COG	YP_004775215.1	1.00E-32	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C7S5\|PSYR1_ARATH	0	Tyrosine-sulfated glycopeptide receptor 1
trEMBL	tr\|V7B3K7\|V7B3K7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11041.1}

Sequence

Transcript Sequence

>Glyur000116s00009233.1
ATGAAGACAGAGGGAACTCCCAGTCGCAGACAAAGACGACCACCAACAAAACCGATCCCATCAACGTCCATGCACATGCTTTCCAAGTTAACGGCCTCTGTTGTCGTCATGATCATAGTACTGTTGGTCGAGTCTTGCTTCCTGGTTCCCGTGGAGGCCTCGTCTTGTGAGCAAGTGGATAGAGACTCGCTCCTGGCCTTCTCCAGGAACATGGTCACACACCCTCCCCTCAATTGGTCCGCTTCCCTTGATTGCTGCCTCTGGGAAGGCATCCTGTGTGGTGATAAGGATCTCAGCCTCAGCCTCAGCCACAGCAGCAGAGTCACCCGTCTATGGCTGAAAAAAAGGGGTCTCACCGGCTCCATCTCCCCATCTTCCCTCACAAACCTCACCGCTCTCTCCCGTCTCAACCTCTCCCATAATCACCTATCCGGTAATCTCCCTCACCAATTCTTCTCTCTTGTTAATCACCTGCAGCTTCTTGATTTGAGCTACAACCGTCTCTCCGGTGAATTGCCACTCTTTGTTGCCAATAACAACAGCAGTGGCAGCAGCGCTATGATCACTATCCGGGAGCTGGATTTGTCTAGTAATCAATTCAACGGAACACTCCCGCCTTCTCTCCTTCAGCACCTGGCGGGAGGAAAAAAAATATCCTTTAATGTCAGTAACAACAGCTTCACGGGTCAAATCCCAACCTCTCTCAAAAAAAGTAACTCGTCCTCTCTGAGATTCCTGGATTATTCCTCCAACCATTTCGATGGCAAAAAAAAGCCAGGACTGGGAGCGTGTTCCAAGCTGGAGAAGTTTCGAGCGGGCCTCAATTCAAAAAAAGGGCCTCTTCCCATTGATATTTTCCATGCCGTCGCTCTCACGGAAATCTCCTTGCCCCTCAATAAGCTCAGCGGAACCATTGGTGATGGCATTGTTAACCTGACCAACCTCACGGAAAAAAAGCTGTACTACAATAAATTAACGGGGCCCATTCCCCCGGATATTGGTAAGCTCTCCAAATTGGAACGGTTAGTCCTTCGTGCCAACAATCTAACGGGCACTCTGCCCCCATCTCTGAAAAAAAGTGCCAATCTTGTCATGCTGGATTTAAGGCTCAACTCCTTGGAGGGAAATCTCTCCGCATTCAATTTCTCCGGACTCCACAGGCTCACCACACTTGACCTTGGCAACAATAGCTTAAAAAAAATCTTACCACCAACCCTTTATGCATGTAAGTCACTTAAAGCGGTGAGGCTGGCATCTAATAACCTCCAGGGACAGATCTCACCCAACATACTTGCCCTTCACTCTCTGGCTTTCCTATCAATTTCTACCAACAACCTCACTAATGCCACTGGGGCTCTCGGGATACTCATGGGGCTCAAGAACCTCAGTACCCTCATGCTCTCCCAGAATTTTTTTGGTGAAAGGATGCCAAATGATAAAAAAATAACAGACCCACATGGATTCCAAAAGATCCAAGTTCTGGCCTTGGGTGGTTGTAAAAAAAAGGGACAAATACCGGCCTGGCTTGCCAATCTGAAGAGGCTCGAGGCCTTGGACCTGTCCTATAACCAAATTGGCGGTTCAATTCCTCCCTGGTTGGGCACACTTCCTCAGCTTTTCTACATAGACTTGTCTGTTAACTGCCTCACAGGAAAATTTCCAGAGGAGCTCACAAGGCTTCAAAAAAAAACATCTCAACAGGCATATGATAGAGCTGAGAGGACTTACCTGGAGTTACCCCTAAAAAAAAATGCCAACAATGTTTCCCAGCTGCAACTGCAATACAATCAGATTTCAAACCTACCACCGGCAATATACCTGGGGAACAACAGCCTCAATGACAGCATCCCAGTAGAGATTGGCCTACTGAAAGTCCTTCATCAGCTGGACCTGAGTTTTAACAACTTCTCTGGCAGTATCCCAGTAAAAAAATCTAACTTGACTAACTTGGAGAAACTATACCTCTCGGGAAACCAACTATCTGGTAAAAAAACTGTTTCACTCAAGAATTTGCATTTTTTGTCTTCCTTCACTGTGGCACACAATGAAAAAAATGGACAGATACCAACTGGTGGTCAGTTTGATACTTTCCCTGCCTCCAGCTTTGAAGGAAACCCACAGTTGTGTGGTTCAGTTATTCAGCGCTCTTGTCATCCTCAAAAAGGTAGCACTGCAGGCGGTCACAGTTCAAGCAGAAAACTAATAATTGGATTTGTCATCACAGCCTGTTTTGGCACCGTTTCCTTCGTTGCAGTATTGATAGTGTGGATACTATCCAAGAGAAGGATCAAAAAAAAAGAAGACGCAGACAAGAATGAACTAGAATCAATTTCTGCCTACTCTAACAGTGGGGTTCACCCTGAGGCTGACAAAGAGGCCAGCCTAGTGGTGTTGTTCCCTAATAAAACAAATGAAATCAAGGATCTTACCATACTTGAAATATTAAAAGCCACTGGAAATTTCAGTCAGGAAAAAAAAAAAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAANGTTACCGGATGGAACTACTAAAAAAATCAAGAAACTTTCAGGGGATATGGGTCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCCTTGTCGACAGCGCGGCATGAGAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGCTATCGGCTTCTCATATATAGTTACATGGAAAATGGAAGTCTGGATTACTGGTTGAAAAAAAAGGCTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAAGATTGCACAAGAAAAAAATTGTGGATTGGCATACATGCATCAGATATGTGAACCACACATAGTGCACCGTGAAAAAAAATCAAGCAATATACTCCTTAATGAAGAGTTTAAGGCACATGTTGCTGATTTTGGGAAAAAAAGGTCGATTCTTCCTTATCATACTCATGTTACAACTGAGCTTGTAGGTACATTAGGTTACATTCCCCCGGAGTACGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTCTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTATCGATGTATCCAAGCCAAAAATCTCAGGGGAGTTGGTTGCCTGGGTTCAACAAATGAGAAGTGAAGGAAAACAAGATCAAGTCTTTGATCCTCTTCTCAGAGGGAAGGGCTTTGAAGAAGAGATGCTGCAGGTACTTGATGTAGCCTGCACGTGTGTCAACCAGAATCCTTTTAAGAGACCAAGCATCAGAGAAGTTGTTAAAAAAATGGAGAATGTAGGATCATCCAACCAACAAATGAATAAAGATCAGTAG

Protein Sequence

>Glyur000116s00009233.1
MKTEGTPSRRQRRPPTKPIPSTSMHMLSKLTASVVVMIIVLLVESCFLVPVEASSCEQVDRDSLLAFSRNMVTHPPLNWSASLDCCLWEGILCGDKDLSLSLSHSSRVTRLWLKKRGLTGSISPSSLTNLTALSRLNLSHNHLSGNLPHQFFSLVNHLQLLDLSYNRLSGELPLFVANNNSSGSSAMITIRELDLSSNQFNGTLPPSLLQHLAGGKKISFNVSNNSFTGQIPTSLKKSNSSSLRFLDYSSNHFDGKKKPGLGACSKLEKFRAGLNSKKGPLPIDIFHAVALTEISLPLNKLSGTIGDGIVNLTNLTEKKLYYNKLTGPIPPDIGKLSKLERLVLRANNLTGTLPPSLKKSANLVMLDLRLNSLEGNLSAFNFSGLHRLTTLDLGNNSLKKILPPTLYACKSLKAVRLASNNLQGQISPNILALHSLAFLSISTNNLTNATGALGILMGLKNLSTLMLSQNFFGERMPNDKKITDPHGFQKIQVLALGGCKKKGQIPAWLANLKRLEALDLSYNQIGGSIPPWLGTLPQLFYIDLSVNCLTGKFPEELTRLQKKTSQQAYDRAERTYLELPLKKNANNVSQLQLQYNQISNLPPAIYLGNNSLNDSIPVEIGLLKVLHQLDLSFNNFSGSIPVKKSNLTNLEKLYLSGNQLSGKKTVSLKNLHFLSSFTVAHNEKNGQIPTGGQFDTFPASSFEGNPQLCGSVIQRSCHPQKGSTAGGHSSSRKLIIGFVITACFGTVSFVAVLIVWILSKRRIKKKEDADKNELESISAYSNSGVHPEADKEASLVVLFPNKTNEIKDLTILEILKATGNFSQEKKKGCGGFGLVYKAXLPDGTTKKIKKLSGDMGLMEREFKAEVEALSTARHENLVALQGYCVHEGYRLLIYSYMENGSLDYWLKKKADGPSQLDWPTRLKIAQEKNCGLAYMHQICEPHIVHREKKSSNILLNEEFKAHVADFGKKRSILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPIDVSKPKISGELVAWVQQMRSEGKQDQVFDPLLRGKGFEEEMLQVLDVACTCVNQNPFKRPSIREVVKKMENVGSSNQQMNKDQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	180752	184072	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009233.1	PF08263.7	LRRNT_2	60	93	7.20E-06
Glyur000116s00009233.1	PF13855.1	LRR_8	107	168	8.50E-07
Glyur000116s00009233.1	PF00560.28	LRR_1	190	212	0.047
Glyur000116s00009233.1	PF00560.28	LRR_1	338	358	0.84
Glyur000116s00009233.1	PF13855.1	LRR_8	362	422	5.60E-07
Glyur000116s00009233.1	PF13516.1	LRR_6	512	529	0.17
Glyur000116s00009233.1	PF00560.28	LRR_1	649	663	0.73
Glyur000116s00009233.1	PF00069.20	Pkinase	823	1091	1.70E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.763
SRR1783600	control	2.943
SRR1783602	moderate drought stress	3.220
SRR1811619	moderate drought stress	3.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.756
DRR006520	Root Summer glycyrrhizin high producing strain	1.646
DRR006521	Root Winter glycyrrhizin high producing strain	1.030
DRR006522	Root Winter glycyrrhizin high producing strain	0.819
DRR006523	Root Summer glycyrrhizin low producing strain	2.838
DRR006524	Root Summer glycyrrhizin low producing strain	2.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.240
SRR2868004	Drought Stress (root)	31.850
SRR2967015	Control (root)	27.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.031
SRR9715740	Leaf	3.419
SRR9715741	Leaf	3.968
SRR9715739	Root	2.519
SRR9715742	Root	6.194
SRR9715743	Root	5.917

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.284
SRR8749028	MeJA induced 9h	107.395
SRR8749029	MeJA induced 9h	30.695
SRR8749030	Uninduced	46.338
SRR8749031	Uninduced	33.240
SRR8749032	Uninduced	24.477

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.075
SRR8400027	Control - Root	8.360