Gene detail

Gene detail information of Glyur000116s00009228

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14360.1	2.00E-150	alpha/beta-Hydrolases superfamily protein
NR	XP_006465726.1	0	PREDICTED: uncharacterized protein LOC102620017 isoform X1 [Citrus sinensis]
COG	YP_721429.1	4.00E-10	lipase, class 3 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q3EBR6\|PLA16_ARATH	8.00E-10	Phospholipase A1-Igamma2, chloroplastic (Precursor)
trEMBL	tr\|V4SMD9\|V4SMD9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR40060.1}

Sequence

Transcript Sequence

>Glyur000116s00009228.1
TAATAATAATAATAATAATAATAATATAAACAAACAGCTTGTGATCGTTCGTGAGTTGAACGAATTGGCATGGAGAGTTCGGGTTCGAGGTACCTGATTGTGTGTCCCCAAAAGGCTGGTTTTCGGGACTTAATGCGTTACGCTGTGGTCGGGGACATTCTCAGTTTGTCCAGGTTTGTGTCTGTGGACACCAACACCCAAACATCTTCGTCGTCGGTGGGCCCCACTCCCACTCCCGATCACAGATGGGTCATCCTCGTCTCCGTTCTTGTTCGCAAAATCATTGCTTTCTTGGCCAAGCCCATGGAGTGGACCGGCTGCTTCCTCGACTTCCTCCTCAATCTCCTCTCCCACAATGGCAACTTCTTTGGTCTCCTTCACAACTTGATACTTGGAAATGTGGTGCTACCTCGGAGGGGTACGGAAACATTTATCAGTACAATTGGGCACTTGGACACGAGGGTTGATCTGCTGCTGCATAATGTAAGGGAAAGGGAGGGAGGCCTCAGCCTCAGCCTCAGCCTCAGGCCAGAAATGGGGAACCGGGCTTTAATGGACCTCTGCATGATGGCTTCCAAGTTAGCATATGAGAACGCCCAAGTCATCAAAAACCTCGTAAACCACCATTGGAAGGCAAGTTGCCCGCCCCTAACTCTTTCTCAATTTGATACGTTAATTTCTTCATCGGACAAGAATGTAATGTCTTCTGTGTGTGCCTCTTTCAAATGCACTTTGTGGACTTCTATAACTGCTGGAATGGTAAGACATGATGCATGGGAGAAGTACTACAAAGCATTCAGCAATTGCATTTGCTATACATTGAAAAATGAAACATTGAACTTATATAATTTTCTGCCAACTTCTTACTTCTGGATTCATAAATTGATAGATTTCCAGAAAGAGATGTCCACTCAAGTGTTTATTCTCTGTGACAAGGCCAAAGGTGCAAATTTGATATTGGTCAGCTTTAGGGGCACTGAACCTTTTGATGCGGATGATTGGAGTACTGATTTTGATTATTCCTGGTATGAAATCCCAAAAGTGGGGAAAATTCACATGGGGTTCCTGGAAGCCCTTGGTCTGGGCAATAGAGATGACCCTGCCACATTCTACCATCAACTTCAAAGGAAAAATACAAAGCCAAATGGTGTCAACATTGGAGCTTACTCTGAATCATTGTTCTCNGGCACTGATTCTGATGCGGATCAATCATTCACTTCTTCTGAGACTCCACCAGAGAAAACGCAGGTGACTGCCTATGACACTCTGAGAAGTAAACTCAAGAGGTTGTTAGAGGAGCACAAGGATGCAAACTTCATCGTTACAGGGCATAGCTTGGGAGGAGCCCTGGCCATACTGTTCCCAACGGTGCTTGTGGTGCATGAGGAGATGGAGATGATGGAAAGGCTGCTTGGTGTATACACGTTTGGCCAACCCAGGATTGGGAATAGGCAGCTTGGGAGATTCATGGAAGCTCATTTGGAACGCCCTCTTCCAAAGTACTTCAGGGTGGTTTACTGCAATGACATTGTCCCCAGGTTGCCTTATGATGACAAAACCTTCTTGTACAAACACTTCGGAAGATGCCTTTACTACAACAGCTTGTATGTTGAAAAAAAAGTGGAGGAGGAGCCAAATAGAAATTCCTTTGGAATGAGATTCGTATTATCAGAACATCTGAATGCTGTTTGGGAGTTAGTTAGAGGCTTGACAATGGGTTACATTGGAGGACCAGAGTATAAGGAAGGGTGGTTTCGCATATTGGCAAGGGTAATAGGACTGGCACTTCCAGGTATTTCGGCTCATTGTCCCACAGATTATGTCAACTCTATAAGACTTGGAAAGGAAAGCTCCATTCAAATGTCTTCTATCTAAGAATTCTAAGAAGTTCTCTCATGTATTATGATTATGATTATGATTATGATTATGATTATGATTATGATTATGATTGGCTTGTTTTGTTTTGTTTTATTTCTATTCCCCAAGGTTGCTCGGTTTTGTCAGGTTTCTAAAAGTTCATACTTGAACCGCCTATGCTTGTGGTTCCTTTCATGATTTTTTTTTTCCTGTTATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	148985	151672	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009228.1	PF01764.20	Lipase_3	298	495	6.90E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.107
SRR1783600	control	6.321
SRR1783602	moderate drought stress	7.299
SRR1811619	moderate drought stress	7.221

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.243
DRR006520	Root Summer glycyrrhizin high producing strain	10.091
DRR006521	Root Winter glycyrrhizin high producing strain	6.737
DRR006522	Root Winter glycyrrhizin high producing strain	6.391
DRR006523	Root Summer glycyrrhizin low producing strain	3.997
DRR006524	Root Summer glycyrrhizin low producing strain	3.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.806
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.390
SRR2868004	Drought Stress (root)	1.831
SRR2967015	Control (root)	1.901

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.282
SRR9715740	Leaf	2.548
SRR9715741	Leaf	1.433
SRR9715739	Root	3.857
SRR9715742	Root	4.903
SRR9715743	Root	4.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.473
SRR8749028	MeJA induced 9h	1.022
SRR8749029	MeJA induced 9h	0.955
SRR8749030	Uninduced	0.383
SRR8749031	Uninduced	0.440
SRR8749032	Uninduced	0.711

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.587
SRR8400027	Control - Root	9.772