Gene detail information of Glyur000116s00009221.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50420.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_003627474.1 | 0 | GDP-fucose protein-O-fucosyltransferase [Medicago truncatula] |
| trEMBL | tr|G7L9X3|G7L9X3_MEDTR | 0 | GDP-fucose protein O-fucosyltransferase {ECO:0000313|EMBL:AET01950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00116 | 116955 | 119687 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03691 | POFUT | EC:2.4.1.221 | Other types of O-glycan biosynthesis | map00514 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000116s00009221.1 | PF10250.4 | O-FucT | 377 | 525 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.908 |
| SRR1783600 | control | 39.258 |
| SRR1783602 | moderate drought stress | 37.097 |
| SRR1811619 | moderate drought stress | 37.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.910 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.623 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.621 |
| SRR2868004 | Drought Stress (root) | 16.544 |
| SRR2967015 | Control (root) | 17.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.390 |
| SRR9715740 | Leaf | 9.002 |
| SRR9715741 | Leaf | 11.529 |
| SRR9715739 | Root | 54.386 |
| SRR9715742 | Root | 29.279 |
| SRR9715743 | Root | 34.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.528 |
| SRR8749028 | MeJA induced 9h | 6.649 |
| SRR8749029 | MeJA induced 9h | 4.146 |
| SRR8749030 | Uninduced | 0.307 |
| SRR8749031 | Uninduced | 0.078 |
| SRR8749032 | Uninduced | 0.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.676 |
| SRR8400027 | Control - Root | 38.967 |