Gene detail information of Glyur000116s00009218 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53820.1 | 2.00E-41 | RING/U-box superfamily protein |
| NR | XP_007139059.1 | 2.02E-93 | hypothetical protein PHAVU_009G261400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9XF63|ATL3_ARATH | 4.00E-61 | RING-H2 finger protein ATL3 |
| trEMBL | tr|V7AZQ2|V7AZQ2_PHAVU | 8.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:ESW11054.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00116 | 105627 | 106505 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000116s00009218.1 | PF13639.1 | zf-RING_2 | 98 | 141 | 7.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.571 |
| SRR1783600 | control | 0.601 |
| SRR1783602 | moderate drought stress | 0.474 |
| SRR1811619 | moderate drought stress | 0.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.686 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.769 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.230 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.250 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.637 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.042 |
| SRR2868004 | Drought Stress (root) | 7.954 |
| SRR2967015 | Control (root) | 9.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 150.670 |
| SRR9715740 | Leaf | 95.677 |
| SRR9715741 | Leaf | 220.050 |
| SRR9715739 | Root | 53.527 |
| SRR9715742 | Root | 55.992 |
| SRR9715743 | Root | 55.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.974 |
| SRR8749028 | MeJA induced 9h | 2.194 |
| SRR8749029 | MeJA induced 9h | 3.432 |
| SRR8749030 | Uninduced | 6.120 |
| SRR8749031 | Uninduced | 0.929 |
| SRR8749032 | Uninduced | 3.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.996 |
| SRR8400027 | Control - Root | 14.508 |