Gene detail information of Glyur000116s00009205 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14160.1 | 6.00E-54 | 2-oxoglutarate-dependent dioxygenase family protein |
| NR | XP_003554797.1 | 5.69E-85 | PREDICTED: uncharacterized protein LOC100809845 isoform X1 [Glycine max] |
| COG | YP_003648469.1 | 7.00E-16 | 2OG-Fe(II) oxygenase [Tsukamurella paurometabola DSM 20162] |
| trEMBL | tr|K7N0H3|K7N0H3_SOYBN | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G45240.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00116 | 45087 | 46552 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000116s00009205.1 | PF13532.1 | 2OG-FeII_Oxy_2 | 175 | 262 | 2.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.259 |
| SRR1783600 | control | 5.068 |
| SRR1783602 | moderate drought stress | 5.100 |
| SRR1811619 | moderate drought stress | 5.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.957 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.388 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.680 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.104 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.156 |
| SRR2868004 | Drought Stress (root) | 8.985 |
| SRR2967015 | Control (root) | 11.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.807 |
| SRR9715740 | Leaf | 3.353 |
| SRR9715741 | Leaf | 2.413 |
| SRR9715739 | Root | 3.036 |
| SRR9715742 | Root | 3.055 |
| SRR9715743 | Root | 3.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.868 |
| SRR8749028 | MeJA induced 9h | 2.009 |
| SRR8749029 | MeJA induced 9h | 2.961 |
| SRR8749030 | Uninduced | 0.722 |
| SRR8749031 | Uninduced | 1.236 |
| SRR8749032 | Uninduced | 2.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.061 |
| SRR8400027 | Control - Root | 7.878 |