Gene detail

Gene detail information of Glyur000116s00009201

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13420.1	0	high affinity K+ transporter 5
NR	KEH31608.1	0	high-affinity potassium transporter [Medicago truncatula]
COG	YP_001547763.1	2.00E-83	K potassium transporter [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9M7K4\|POT5_ARATH	0	Potassium transporter 5
trEMBL	tr\|A0A072URB2\|A0A072URB2_MEDTR	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}

Sequence

Transcript Sequence

>Glyur000116s00009201.1
ATGGAAACGATGAGTTTGGTTCCAAATCAACAACCAGAGGACAGAGAACTTTCCAACTACAAACTCGAAACACCATCTAGCGAGCTGAAACGAGCCCATAAACTAAAGCAGAAGCTTGAGAATAGTCATTTTGCGCGGATTNTGCTTTTAATTCTAGCTATAATGGGAACTTCCATGGTCATAGGAGATGGGATTCTTACTCCATCAATTTCAGTCCTCTCTGCGGTTAGTGGGATCAGTTCATCACTAGGTCAAGATGCTGTTGTGGGTATCACTATAGCGATCTTGGTCGTCCTATTTTCTGTGCAACAATTCGGTACCGATAAAGTGGGACTCTCTTTCGCTCCAATTATTTTAACATGGTTTTCATTCATCGGTGGAATTGGTCTCTACAATTTATTCAAATATGACATTGGAGTATTACGGGCTTTTAATCCAAAATATATAGTTGATTACTTTAAACGGAACGGTAAGCAAGGATGGATATCACTTGGTGGAGTCTTTCTATGCATAACAGGATCTGAGGCTATGTTTGCTGACTTGGGTCACTTTAACGTTCGAGCCATTCAAATTAGCTTTTCTTTCATTACATGTCCTGCGATTTTGGCAGCATATACTGGGCAAGCAGCATATCTACGAAAGTTCCCCGAGAATGTGGCGAATACTTTCTATGAAAGTATACCAAAACCCTTGTATTGGCCAACATTTGTGGTGGCTGTTGCTGCTGCAATTATAGCCAGCCAGGCAATGATTTCAGGAGCATTTTCCATTATATCCCAGGCCCTAAGCCTAGGTTGTTTCCCAAGAGTTAAGGTTGTGCATACTTCCACTAAGCACGANGGTCAGGTGTATATTCCTGAAATCAACTACATGTTCATGATAGCATGTATTCTGGTCTGTGCTGCCTTCAAGACCACAGAAAAGATTAGCCATGCATATGGGATTGCAGTTGTTGGTGATATGCTGATCAGCACAACACTGGTTTCGCTTATAATGCTAGTTATATGGAAGAAGAGCCTATGGAAGGTGGCTATCTTCTTTTTGGCATTCGGTTTTACTGAGCTTCTTTACTTCTCATCTCAATTGACCAAGTTCACAGGAGGAGGCTATCTTCCAATTGTATTAGCTCTGTTCTTGACCACGGTGATGGGAACCTGGCATTATGTGCACAAAGAGAGGTACATGTTTGAGCTCAAAAACAAGGTTTCTAGTGAGTATTTGAGGGAATTGGCCGACAATAGAGACGTACATAGAGTTCCTGGAATCGCACTTCTGTATTCTGAGCTTGTGCAAGGCATTCCTCCTATATTCCCACACTTCATAGCCAGCGTGCCATCCATCCATTCAGTTGTCGTCTTTGTTTCCATCAAGACAATCCCCGTGAGTAGAGTTGCATCGGAAGAGAGGTTTCTGTTTCGACAGGTGGAACCAAGGGAGTATCGCGTGTTTCGTTGTGTTGTGAGNCGTGGTTACAGTGATGTGGTTGAGAATCCTGTGNAGTTTGAGTCACAGTTGATACAAAATCTCAAGGGATTTATTCAACAAGAGGGCTTTATGCTCGAGGCGACAGAACAANTAGTACCTAGTAGTACTACTATTTCCACCAATGTTGAGAGAGGTGATCATGATCCGAATCCGAATCAGATGGAAGCCAAAGAATTAGGAAAACCGAAGTCTACTAGTTCTTCCGGTAGAATTATCCCAAATCAAGGCGNGTCTCGCGCCTCATCAGATTCCATTCAATCACTAGGTGGGAGTGCGGCTTCTTGCGAAAGAACTTTAGACAGGGGGAAAACTCCATGGCAATCCCTCGCAACAGACTTCTCAAGATCGGATGAGCGGAGAGGAAGAGATAGATACGGCAAACGAGACTGCGGAGAAAACCAAAAGCTGAAGGAGCGAAAGGGATCATCGGCAAAGCTACGCCGTGTAGACTCTCTCAACTTGGAAGCTGGAAGAGTGTCTATGGCTGCAAACCACCCCTCCAAGGTGAGTTTGGTTCCAAATCAACAACCGGAAGACAGAGAACTTTCTAACTACAAACTCGAAAAACCATCTAGCGAGCTAAAACGAGCCCATAAACTAAAGCAGATGCTTGAGAATAGTCATTTTGCACGGATTCTGCTTTTACTTCTAGCTATAATGGGAACTTCCATGGTCATAGGAGATGGGATTCTTACTCCAACAATTTCAGATGCTGTTGTGGGTATCACTGTAGCGATCTTGGTCGTCCTATTTTGTGTGCAACGATTCGGTACTGATAAAGTGGGACTCTCATTTGCTCCAATTATTTGTACGTGGTTTTTATTCATCGCTGGAATTGGTCTCTACAATTTATTCAAATATGAAATTGGGGTATTACGGGCTTTTAATCCAAAATATATATTTGATTACTTTAAACGGAACGCGATCTTGGTCGTCCTATTTTCTGTGCAACAATTCGGTACCGATAAAGTGGGACTCTCTTTCGCTCCAATTATTTTAACATGGTTTTCATTCATCGGTGGAATTGGTCTCTACAATTTATTCAAATATGACATTGGAGTATTACGGGCTTTTAATCCAAAATATATAGTTGATTACTTTAAACGGAACGGATCTGAGGCTATGTTTGCTGACTTGGGTCACTTTAACGTTCGAGCCATTCAAATTAGCTTTTCTTGCATTACATGTCCTGCGATTTTGGCAGCATATTGTGGGCAAGCAGCATATCTACGAAAGTTTCCCGGGAATGTGGCGAATACTTTCTATGCTAGTATACCGAAACCCTTGTATTGGCCAACATTTGTGGTGGCTGTTGCTGCTGCAATTATAGCCAGCCAGGCAATGATTTCAGGAGCATTTTCCATTATATCCCAGGCCCTACGCCTAGGTTGTTTCCCAAGAATTAAGGTTGTGCATACTTCCACTAAGCACGAGGGTCAGGTGTATATTCCCGAAATCAACTACATGTTCATGACAGCATGTATTCTGGTCTGTGCTGCCTTCAAGACCACAGAAAAGATTAGCCATGCATATGGGATTGCAGTTGTTGGTGATATGCTGATCACAACAACACTAGTTTCGCTTATAATGCTAGTTATATGGAAGAAGAGCCTATGGCAGGTGGCTATCTTCTCTTTGGCATTCGGTTTTACTGAGCTTATTTACTTGTCATCTCAATTGACCAAGTTCACGGGAGGAGGTTATCTTCCAATTGTGTTAGCTCTATTCTTGACGACAATGATGGGAATCTGGCATTATGTGCACAAAGAGAGGTACATATTTGAGCTCAAAAACAAGGTTTCTATTGAGTATTTGAGAGAGTTGGCCAACAATAGAGACGTACATAGAGTGCCTGGAATCGGACTTCTGTATTCTGAGCTTGTACATGGCATTCCTCCTATATTCCGACACTTCATAGTCAGCGTGCCATCGATCCATTCAGTTGTCGTCTTTGTTTCCATCAAGACAATCCCCGTGAGTAGAGTTGCATCAGAAGAGAGATTTCTGTTTCGGCAGGTGGAACCAAGGGAGTATCGAGTGTTTCGTTGTGTTGTGAGGCGTGGTTACAGTGATGTGGTTGAGAATCCTGTGGAGTTTGAGTCACAGTTAATACAAAATCTCAAGGGATTTATTCAACAAGAGAGCTTTATGCTCGAGTCGACTGCAGCTGAACCTAGTAATACTATCAATTCCACCAATGTTGAGAGTGGTGATGATCAGAATCAGATGGCAGCC

Protein Sequence

>Glyur000116s00009201.1
METMSLVPNQQPEDRELSNYKLETPSSELKRAHKLKQKLENSHFARIXLLILAIMGTSMVIGDGILTPSISVLSAVSGISSSLGQDAVVGITIAILVVLFSVQQFGTDKVGLSFAPIILTWFSFIGGIGLYNLFKYDIGVLRAFNPKYIVDYFKRNGKQGWISLGGVFLCITGSEAMFADLGHFNVRAIQISFSFITCPAILAAYTGQAAYLRKFPENVANTFYESIPKPLYWPTFVVAVAAAIIASQAMISGAFSIISQALSLGCFPRVKVVHTSTKHXGQVYIPEINYMFMIACILVCAAFKTTEKISHAYGIAVVGDMLISTTLVSLIMLVIWKKSLWKVAIFFLAFGFTELLYFSSQLTKFTGGGYLPIVLALFLTTVMGTWHYVHKERYMFELKNKVSSEYLRELADNRDVHRVPGIALLYSELVQGIPPIFPHFIASVPSIHSVVVFVSIKTIPVSRVASEERFLFRQVEPREYRVFRCVVXRGYSDVVENPVXFESQLIQNLKGFIQQEGFMLEATEQXVPSSTTISTNVERGDHDPNPNQMEAKELGKPKSTSSSGRIIPNQGXSRASSDSIQSLGGSAASCERTLDRGKTPWQSLATDFSRSDERRGRDRYGKRDCGENQKLKERKGSSAKLRRVDSLNLEAGRVSMAANHPSKVSLVPNQQPEDRELSNYKLEKPSSELKRAHKLKQMLENSHFARILLLLLAIMGTSMVIGDGILTPTISDAVVGITVAILVVLFCVQRFGTDKVGLSFAPIICTWFLFIAGIGLYNLFKYEIGVLRAFNPKYIFDYFKRNAILVVLFSVQQFGTDKVGLSFAPIILTWFSFIGGIGLYNLFKYDIGVLRAFNPKYIVDYFKRNGSEAMFADLGHFNVRAIQISFSCITCPAILAAYCGQAAYLRKFPGNVANTFYASIPKPLYWPTFVVAVAAAIIASQAMISGAFSIISQALRLGCFPRIKVVHTSTKHEGQVYIPEINYMFMTACILVCAAFKTTEKISHAYGIAVVGDMLITTTLVSLIMLVIWKKSLWQVAIFSLAFGFTELIYLSSQLTKFTGGGYLPIVLALFLTTMMGIWHYVHKERYIFELKNKVSIEYLRELANNRDVHRVPGIGLLYSELVHGIPPIFRHFIVSVPSIHSVVVFVSIKTIPVSRVASEERFLFRQVEPREYRVFRCVVRRGYSDVVENPVEFESQLIQNLKGFIQQESFMLESTAAEPSNTINSTNVESGDDQNQMAA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	3307	23438	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009201.1	PF02705.11	K_trans	36	492	8.00E-159
Glyur000116s00009201.1	PF02705.11	K_trans	695	802	3.40E-26
Glyur000116s00009201.1	PF02705.11	K_trans	803	1185	1.10E-122
Glyur000116s00009201.2	PF02705.11	K_trans	62	127	6.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.439
DRR006520	Root Summer glycyrrhizin high producing strain	0.445
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.058
DRR006524	Root Summer glycyrrhizin low producing strain	0.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.015
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.051
SRR2868004	Drought Stress (root)	6.168
SRR2967015	Control (root)	3.460

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.444
SRR9715740	Leaf	6.002
SRR9715741	Leaf	1.229
SRR9715739	Root	6.428
SRR9715742	Root	0.596
SRR9715743	Root	0.057

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	188.762
SRR8749028	MeJA induced 9h	191.987
SRR8749029	MeJA induced 9h	42.780
SRR8749030	Uninduced	40.680
SRR8749031	Uninduced	56.049
SRR8749032	Uninduced	1.823

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.478
SRR8400027	Control - Root	2.145