Gene detail information of Glyur000115s00008281 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43465.1 | 5.00E-90 | RNA-binding ASCH domain protein |
| NR | XP_004486888.1 | 0 | PREDICTED: uncharacterized protein LOC101499816 isoform X6 [Cicer arietinum] |
| COG | YP_184250.1 | 3.00E-23 | hypothetical protein TK1837 [Thermococcus kodakarensis KOD1] |
| trEMBL | tr|I1MD46|I1MD46_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G03280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 332754 | 337009 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008281.1 | PF04266.9 | ASCH | 134 | 230 | 5.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.479 |
| SRR1783600 | control | 4.612 |
| SRR1783602 | moderate drought stress | 14.415 |
| SRR1811619 | moderate drought stress | 14.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.305 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.335 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.893 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.073 |
| SRR2868004 | Drought Stress (root) | 15.880 |
| SRR2967015 | Control (root) | 12.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.889 |
| SRR9715740 | Leaf | 5.489 |
| SRR9715741 | Leaf | 3.902 |
| SRR9715739 | Root | 0.967 |
| SRR9715742 | Root | 3.423 |
| SRR9715743 | Root | 2.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.236 |
| SRR8749028 | MeJA induced 9h | 3.716 |
| SRR8749029 | MeJA induced 9h | 2.854 |
| SRR8749030 | Uninduced | 1.847 |
| SRR8749031 | Uninduced | 0.207 |
| SRR8749032 | Uninduced | 0.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.621 |
| SRR8400027 | Control - Root | 13.614 |