Gene detail information of Glyur000115s00008275 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43490.4 | 0 | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| NR | XP_006595072.1 | 0 | PREDICTED: small G protein signaling modulator 1-like isoform X1 [Glycine max] |
| trEMBL | tr|I1MD42|I1MD42_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G03240.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 303830 | 312592 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008275.1 | PF00566.13 | RabGAP-TBC | 373 | 518 | 1.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.376 |
| SRR1783600 | control | 3.273 |
| SRR1783602 | moderate drought stress | 3.587 |
| SRR1811619 | moderate drought stress | 3.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.282 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.629 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.548 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.316 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.338 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.239 |
| SRR2868004 | Drought Stress (root) | 12.036 |
| SRR2967015 | Control (root) | 9.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.810 |
| SRR9715740 | Leaf | 2.685 |
| SRR9715741 | Leaf | 2.519 |
| SRR9715739 | Root | 0.232 |
| SRR9715742 | Root | 2.719 |
| SRR9715743 | Root | 2.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.930 |
| SRR8749028 | MeJA induced 9h | 15.286 |
| SRR8749029 | MeJA induced 9h | 12.470 |
| SRR8749030 | Uninduced | 12.167 |
| SRR8749031 | Uninduced | 10.419 |
| SRR8749032 | Uninduced | 6.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.741 |
| SRR8400027 | Control - Root | 10.534 |