Gene detail

Gene detail information of Glyur000115s00008266

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72830.1	1.00E-37	nuclear factor Y, subunit A3
NR	XP_003597550.1	2.42E-126	Nuclear transcription factor Y subunit A-3 [Medicago truncatula]
Swissprot	tr\|Q93ZH2\|NFYA3_ARATH	1.00E-45	Nuclear transcription factor Y subunit A-3
trEMBL	tr\|G7IS21\|G7IS21_MEDTR	2.00E-125	Nuclear transcription factor Y subunit A4 {ECO:0000313\|EMBL:AFK49646.1}

Sequence

Transcript Sequence

>Glyur000115s00008266.1
ATGGATTATTATTCTTCTGAATCTGAAGTCCAACAATCATCCATGTCCAAAAGTTTGAGCTTGAATGTGGATGTGCTGCCACAAAAATGCCATAAGAGCAAGGCACTGAGTCTTCAATTTCATCAACAGGATTCGTCTTCAACTCAATCGACCGATCAGTCTTATCCTGAAGTTGGCTCAGCACAATCAGGTATTNAAATTGAAACGCTGTCTATTTATACGATTCTTCGTGCTTATGAACTGCATGGTTCTTCTTTTGGTTCAACATTTAGCAGAACTGCAGGGAACAGTATGAGGAGTTCAGATTTCACCTTCCCTCCTCCACTGCTGGATCACAACCAATCACTTGCTCGAGTTGCATTCCACTTTGCTGATCCATGCTATGGTGGCCTAGCTGCTGCATATGGTCCACAGTTTCAGGCTTATAGCATCATGCCATCAAATTCTGACCAGATTCATCATGGAACTGCTCCTGTTCGAATCCCTCTGCCGACTGATCTCACAGAAGAACCCATATATGTGAATTCAAAGCANTACCATGCTATTCTGAGGCGAAGAGAGTGCCGAGCAAAACTTGAAGCACATAACCGACTCATCAAGGCTCGGAAACCATATCTTCACGAGTCCCGCCATCTACATGCATTAAAGCGAGCTAGAGGTATCGGTGGCCGCTTTCTCAATACTAAGAAGCTCCAAGAATCAAAGCTTAGTTCTTCACCAAACCANGGCCTAAATGTTTCCAGCTCTACTTGTCTGAATTTGAGTGGAAACATGCCAGAATCTAAAATGCATCATCACATTCACCAGGTAGAAAACTACAGAGATGGTGCTTCAACCACCAGCTGTTCTGAATCTGATGTCACATATGCATCTAATAGGAATGGAATCTTCCAGCAGCAACAGGAGTTAGGCTTCAGGTTATGCAGTTACCCTGCTCACACCGGACGGAATNTGCAGGATTACACAGCTGATAAGGGCGGCGGTGTGAATCATCGCCGACTANCTGTNCTCATGTGATGTGACAGACTTATAGAGCACATCACATAGCATCACTCTGGTTATTCTTCGTCCATTCAGATGAATAACCACTGCTTGTGTTGTGTTCCTTCCATTGGGAAGTCATCCTTGGCTCATATTTATTTATGTGTTGATACTGTTTGATTATTTTCAATTTCCAGTACATTTTACTACTATCTATTGTGTTGGTGTAGTAGCCTAAAAGAAGCAGCAGCGGCAGCAGCAAGCACATTTAGTGATTGATTAAACTGACTTGTCAAAAACAAATGCTTTTTTCTATGTTGATGTCATTTATGCAACTTGTCTTTGTTGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	251937	254765	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008266.1	PF02045.10	CBFB_NFYA	169	225	1.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.907
SRR1783600	control	56.476
SRR1783602	moderate drought stress	56.203
SRR1811619	moderate drought stress	55.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.716
DRR006520	Root Summer glycyrrhizin high producing strain	31.688
DRR006521	Root Winter glycyrrhizin high producing strain	47.784
DRR006522	Root Winter glycyrrhizin high producing strain	46.370
DRR006523	Root Summer glycyrrhizin low producing strain	38.382
DRR006524	Root Summer glycyrrhizin low producing strain	38.349
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.338
SRR2868004	Drought Stress (root)	45.423
SRR2967015	Control (root)	39.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.446
SRR9715740	Leaf	32.695
SRR9715741	Leaf	30.091
SRR9715739	Root	23.478
SRR9715742	Root	25.553
SRR9715743	Root	23.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.219
SRR8749028	MeJA induced 9h	22.170
SRR8749029	MeJA induced 9h	24.099
SRR8749030	Uninduced	38.179
SRR8749031	Uninduced	17.205
SRR8749032	Uninduced	18.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.411
SRR8400027	Control - Root	59.640