Gene detail

Gene detail information of Glyur000115s00008261

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72820.1	2.00E-105	Mitochondrial substrate carrier family protein
NR	XP_003546978.1	1.23E-163	PREDICTED: solute carrier family 25 member 44-like [Glycine max]
Swissprot	tr\|F4HT41\|SAMC2_ARATH	2.00E-21	Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor)
trEMBL	tr\|I1MD28\|I1MD28_SOYBN	5.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G03140.1}

Sequence

Transcript Sequence

>Glyur000115s00008261.1
ATGAACTTGGGTGAGTCCGAGTCCGAGTCCAAGGAAGAAGAATCGGCTGTTGCAGAGGTTCATTTCCCATCGGATATCGATTGGCAAAAGCTTGATNAATCAAAGTTTTTCTTCCTCGGTGCAGCTCTTTTCTCTGGTGTCTCAGCAACACTTTACCCCATCGTTGTGTTGAAAACCCGTCAACAATTAGCTCAGTGTCAAGTCTCTTGCATCAGAATCGCGTTTTCACTGATCAGGCTTGAGGGTTTTCGAGCACTGTACAGAGGATTTGGGACTTCTCTTATGGGTACAATCCCTGCTAGAGCCTTATACATGGCTTCACTCGAGATTACAAAGAGCAGTGTTGTTGGTACTGCCACTGTTGGGTTTGGTTTACCCGAACCAGCTGCTTCTACAATTGCCAATGCAGTTGCTGGTTTGAGTGCAGCAGTTGCAACTCAACTTGTGTGGACCCCAGTTGATGTAGTGAGCCAGAGATTAATGGCTCAGGGAAGTTCTAATAAATCACAATTATATACTAATGGGATTGATGCATTTAGGAAAATTCTCAAGAGTGATGGCCCAAGAGGGTTGTATAGGGGTTTTGGGGTATCAATTTTGACATACGCACCTTCCAATGCTGTTTGGTGGGCTTCTTATTCTATGGCACAAAGGGTTGTTTGGAAAAGTTGGGGTGGTGAATTGAAGGCGGATTCGAAAACTGTGATGGCAGTTCAGGGAGTGAGTGCAGCTATGGCTGGTGGGGTATTTGCTTTGATAACCATGCCATTGGACACAAACAAGACGAGGCTGCAGGTGTTGGAGNGTCATGGTGGTCGTGATGAGAATGGGCGTCGTGGTTGTGGAGGACCAACGGTTGTGCAGACAATGAAGAATTTGGTCAAGGAAGGTGGTTGGATGGCATGTTATAGAGGGTTGGGACCTAGATGGGCTTCAATGTCAGTGTCTACAACAACTATGATCACTACTTATGAGTTCCTTAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	242774	243760	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008261.1	PF00153.22	Mito_carr	41	114	1.20E-10
Glyur000115s00008261.1	PF00153.22	Mito_carr	131	222	1.20E-21
Glyur000115s00008261.1	PF00153.22	Mito_carr	237	328	1.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.947
SRR1783600	control	12.834
SRR1783602	moderate drought stress	19.322
SRR1811619	moderate drought stress	17.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.060
DRR006520	Root Summer glycyrrhizin high producing strain	13.114
DRR006521	Root Winter glycyrrhizin high producing strain	2.913
DRR006522	Root Winter glycyrrhizin high producing strain	2.742
DRR006523	Root Summer glycyrrhizin low producing strain	4.788
DRR006524	Root Summer glycyrrhizin low producing strain	5.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.571
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.628

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.758
SRR2868004	Drought Stress (root)	13.506
SRR2967015	Control (root)	12.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.997
SRR9715740	Leaf	2.670
SRR9715741	Leaf	2.084
SRR9715739	Root	3.132
SRR9715742	Root	5.065
SRR9715743	Root	5.159

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.338
SRR8749028	MeJA induced 9h	3.828
SRR8749029	MeJA induced 9h	0.468
SRR8749030	Uninduced	1.319
SRR8749031	Uninduced	0.481
SRR8749032	Uninduced	0.565

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.445
SRR8400027	Control - Root	8.934