Gene detail

Gene detail information of Glyur000115s00008260.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G29840.1	Pyridoxal-5'-phosphate-dependent enzyme family protein
NR	XP_004486860.1	PREDICTED: threonine synthase, chloroplastic-like [Cicer arietinum]
COG	YP_002463167.1	threonine synthase [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9MT28\|THRC_SOLTU	Threonine synthase, chloroplastic (Precursor)
trEMBL	tr\|G7IS24\|G7IS24_MEDTR	Threonine synthase-like protein {ECO:0000313\|EMBL:AES67804.1}

Sequence

Transcript Sequence

>Glyur000115s00008260.1
ATGGCTTCCTCATCTCTGTTCCAGTTGCAGTCCTCCTCCTCGCCTTTCTCCCTCAACCCCAAACCCAAACCCTCCCCACTTAATCTTATCCAACCCAAACCAACCCATTTCTTCCCCATCAGAGCCCAATCTCAACCCGTACCACCCCTCACTCAAAACAACAACAACAACAACAACAACTCCCCCTCCCCCTCCCCACCGGCGAATCCGAAGCAGCGCCGCCCCGCCGACGAGAACATAAGGGACGAAGCCCGCCGTAAGAAGGACGTATCCCACAGCAACCTCTTCTCCGCCAAGTACGTCCCTTTCAACGCCGACCCTTCCTCCACCGAGTNCTACTCCCTCGACGAGATCGTCTACCGATCCCAATCCGGCGANCTCCTCGACGTCCAGCACGACCTCGAGGCACTNAAGAGGTTCGACGGCNCGTACTGGCGCAACCTCTTCGACTCGCGCGTGGGGAAGACCACGTGGCCNTACGGTTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTACCCGAGATCGACGACGACGACATCGTAAGCGCCTTCGAAGGAAACTCCAACCTCTTCTGGGCTGAGCGTTTCGGCAAACACTTCCTCGGCATGAACGANCTTTGGGTCAAGCATTGCGGAATCAGCCACACCGGAAGCTTCAAGGATCTCGGAATGACCGTTTTGGTCAGCCAGGTTAACCGCCTCATGAAGATGAATCGCCCCGTCGTCGGCGTCGGTTGTGCCTCCACCGGCGACACCTCCGCCGCTCTCTCAGCCTATTGCGCCTCCGCGGGAATCCCTTCCATCGTTTTCCTTCCCTCAAATAGAATCTCCCTTGCGCAATTGGTTCAGCCAATTGCAAATGGCGCTTTTGTGTTGTCCATTGACACTGATTTTGATGGCTGCATGCAGTTGATTCGACAGGTNACCGCTGAGTTGCCGATTTATTTGGCAAACTCGTTGAACAGTTTGAGGCTTGAAGGGCAGAAAACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAGGTACCTGATTGGGTCATTGTCCCTGGTGGGAACCTTGGGAATATCTATGCTTTTTACAAAGGGTTTCACATGTGTAGAGAGCTTGGGCTTGTGGATAGGATCCCAAGGCTTGTTTGTGCTCAGGCTGCNAATGCTAATCCTTTGTATTTGTACTTTAAGTCTGGGTGGAAGGAGTTTAAGCCTGTTAGGGCACAGACTACCTTTGCTTCTGCAATTCAGATTGGTGATCCTGTTTCCATTGATAGGGCTGTTCATGCATTGAGGAACTGTAATGGGATTGTTGAGGAAGCCACTGAGGAGGAGTTGATGGATGCTATGGCTCAGGCTGATTCCACTGGGATGTTTACTTGTCCACACACTGGGGTTGCTTTGACTGCTTTGGTTAAGCTTAGGAATAGTGGGGTTATCAAGGCTACTGATAGGACTGTGGTTGTGAGTACTGCTCATGGGTTGAAGTTCACTCAGTCCAAGATTGATTACCATTCCAGGAATATCAAGGACTTGGCTTGCCAGTTTGCAAACCCACCACTGCAAGTCAAGGCTGACTTTGGGTCTGTTATGGATGTTTTGACCAAGTACTTGCAGAGTAAGGCTCCTAAGCANCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	234457	236091	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01733	thrC	EC:4.2.3.1	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Vitamin B6 metabolism	map00750

Gene Ontology

biological_process
GO:0006520 cellular amino acid metabolic process

molecular_function
GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008260.1	PF00291.20	PALP	197	489	6.70E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.417
SRR1783600	control	50.107
SRR1783602	moderate drought stress	42.131
SRR1811619	moderate drought stress	42.273

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.349
DRR006520	Root Summer glycyrrhizin high producing strain	48.569
DRR006521	Root Winter glycyrrhizin high producing strain	27.954
DRR006522	Root Winter glycyrrhizin high producing strain	28.084
DRR006523	Root Summer glycyrrhizin low producing strain	74.851
DRR006524	Root Summer glycyrrhizin low producing strain	75.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.636
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.237

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.691
SRR2868004	Drought Stress (root)	55.924
SRR2967015	Control (root)	56.057

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.248
SRR9715740	Leaf	13.575
SRR9715741	Leaf	11.469
SRR9715739	Root	61.979
SRR9715742	Root	57.560
SRR9715743	Root	59.651

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.858
SRR8749028	MeJA induced 9h	43.325
SRR8749029	MeJA induced 9h	23.433
SRR8749030	Uninduced	27.554
SRR8749031	Uninduced	12.820
SRR8749032	Uninduced	18.457

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.942
SRR8400027	Control - Root	32.395