Gene detail

Gene detail information of Glyur000115s00008259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72790.1	4.00E-22	hydroxyproline-rich glycoprotein family protein
NR	XP_004487232.1	6.90E-158	PREDICTED: uncharacterized protein LOC101499728 [Cicer arietinum]
trEMBL	tr\|G7IS25\|G7IS25_MEDTR	1.00E-147	Hydroxyproline-rich glycoprotein family protein {ECO:0000313\|EMBL:AES67805.1}

Sequence

Transcript Sequence

>Glyur000115s00008259.1
ATGGAAGAAGAGGAAGATATGTCGCCACCCTTCTGGCTGCAAAACAACGGCGGCGGCGGCGACCGGCGGCGACTCAGCCGCTCATACTCAATGTTCATAAGCTCCGGCGTTTTCCTCATACTCTTTCTGGTGACTGCACTTGCTTTCATCTTCGTGGTAGTTCCCACATTGCACTCTTTCAGTTCCAACATTTTCAACAAACCCCATAATTCGGTGAAGAAGAGCTGGGATTCCCTCAACCTTGTACTTGTTCTCTTTGCCATATTCTGCGGCTTCCTTAGCAGAAACAACAACACCAACGAAAGTCCACGTTCGTATGAAGATCAAACGATTCAAACATTCTCAGACACAAACACACCACAAGAGTACNAGAAACCAAACCCAGAAGAAACACCACCACCAGTACCACGGCCATGGTATGAGTACTCAGATCATCGAATAACATATAACAGGCTGAGGAGTTTCAGGTCCTACCCTGATCTCCGGCANGAGTCTTTGTGGGTCGCCGGCGATGAACGGTGGCGATTTTATGACGATACCCGTGTTAACGGNTATCGTGGATTAGACTTGGATGCTGAAGAAGAAAAAGAAGAAGAAACGGGTACCATAAAAAACATTGAAGTGGACACTTTTGTAGCTCGTGGTGGAAGAAACACCGAGAGAACGTATCAACCGGAAACGATTGAGAAANAGAGAAACAATGCTCCAAAAGAAGAGAGCTTAAACTACTACCGGACAGGGAAGAAGAATAGAAGAGCAAGTGCAACAAAAGAGTTGTTGACATCTCTGAAAGGAAAGAAGAAGAAGAAGAAGAAACAGAGCGTTGAAAATTCTCAGAGCATTCCGCCGCCGCCGCCGCCACCGCCTCTGCCTCCGCCTCTGCCTCCGCCGCCGTCTTCAGTTTTTCACAATCTGTTCTCTTCAAAGAAAAGCAAACACAAAAAGCTTCACTCTGCTTCTTCTTCACCGCCACGGCCGCAGAAACATCATGTTTCACCCATGCTTGTGTCTAAAACCAAACCGGTTCATGTGGGTGTGGCAACACATAAACCCCGCGTATCAAACAAAAGGGAGGATTTCTTTGCATTTGAAGAAAATGTGGTGATGACTGGTAATGAATCACCGTTGATCCCAATACCACCGCCNCCACCGCCACCGCCACCGTTCAAAATGCCGGCATGGAAGTTCCGGGTGCAGGGTGACTATGTTAGAATAGANAGCATGAGTAGTACAAGTGATAGTGGTTCGCCAGAGTTAGATGAAGTTGTGGAGTCACCAAGGTCAACAACNGGTGAACCTTCAATCCTATTGGTGTATCCCACTCCCAACGCAGATGTTGATAGCAAAGCTGATAACTTTATTGAAAGCTTCAGGGCTGGTTTGAAGATNGAGAAAATGAAATCCATTAAGGAGAAGAAGCAGGGGATACGGAGGTCTAATCTATACTCTTCACCAAAAGATGAAACTGGTCAACCTAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	229765	231246	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008259.1	PF05553.6	DUF761	443	476	1.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.663
SRR1783600	control	2.595
SRR1783602	moderate drought stress	2.627
SRR1811619	moderate drought stress	2.373

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.477
DRR006520	Root Summer glycyrrhizin high producing strain	0.578
DRR006521	Root Winter glycyrrhizin high producing strain	0.224
DRR006522	Root Winter glycyrrhizin high producing strain	0.220
DRR006523	Root Summer glycyrrhizin low producing strain	0.373
DRR006524	Root Summer glycyrrhizin low producing strain	0.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.344
SRR2868004	Drought Stress (root)	17.514
SRR2967015	Control (root)	9.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.108
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	3.827
SRR9715742	Root	4.894
SRR9715743	Root	4.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.292
SRR8749028	MeJA induced 9h	130.204
SRR8749029	MeJA induced 9h	82.191
SRR8749030	Uninduced	163.439
SRR8749031	Uninduced	140.696
SRR8749032	Uninduced	49.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.079
SRR8400027	Control - Root	12.059