Gene detail

Gene detail information of Glyur000115s00008252.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	XP_003597558.1	Lipoxygenase [Medicago truncatula]
Swissprot	tr\|P14856\|LOX2_PEA	Seed linoleate 9S-lipoxygenase-2
trEMBL	tr\|G7IS29\|G7IS29_MEDTR	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000115s00008252.1
ATGTTTTCAGGGATCACGGGAATCGTGAACAGAGGGCACAAGCTGAGAGGGACAGTGGTGTTGATGCGCAAGAACGTGTTGGACTTCAACACCATTGCCAGCGTCGGTAGTGGAAGCGTCGGCGGAATCATCGGCACCGGCATCAACATCATTGGCTCTACCGTCGATACCCTCACTGCCTTCTTGGGCCGCAGCGTCTCCCTCCAGCTCATTAGTGCTACCAAGACTGATGCAAATGGAAAAGGGAAAGTTGGAAAAGATACGTTTTTGGAAGGTATTATTGCCTCATTACCAACCTTGGGAGCTGGCGAATCTGCATTCGATATTCATTTTGAATGGGATGATGACATGGGAATTCCCGGTGCATTTTACATCAAGAACTATATGCAAGTTGAGTTTTACCTCAAGAGTCTGACCCTTGAAGANGTTCCAAACCACGGAACCATCCGCTTTGTATGCAACTCCTGGGTTTACAACTCAAAACTTTACAAAAGCCCACGCATTTTCTTTGCAAACAAGACATATCTTCCAAGTGAAACACCATCGCCACTTGTCAAATATAGAGAAGAAGAATTGCATAATTTAAGGGGAGATGGAACAGGAGAGCGCAAAGAACACGAAAGAATCTACGATTATGATGTCTACAACGACTTGGGCAATCCAGATCACGGTGAAAAATTTGCTCGCCCAATTCTAGGAGGGTCTAGCACCTATCCCTACCCTCGTAGGGGAAGGACCGGTCGATATCCATCAAGGAAAGATCCGAATAGTGAGAAACCAGGAGAAGTATATGTTCCAAGAGATGAGAATTTTGGTCATTTGAAGTCCTCGGATTTTCTTACATATGGAATAAAATCTTTATCTCAGTATGTATTGCCAGCATTCCAATCAGCATTCGATTTGAATTTCACGCCGCTTGAGTTTGATAGTTTCCAAGATGTGCGTGACCTCTATGAGGGTGGAATTAAGCTACCCACAGATATAATCAGCACAATTAGCCCTTTACCAGTGATCAAAGAACTTTTCCGTACTGATGGTGAACAGATCCTCAAGTTTCCACCACCTCACATCCTTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGCTTGCCGGTGTAAATCCTTGCATGATTCGCGGTCTTCAAGAGTTTCCTCCAAAAAGCAATCTGGATCCCACAATCTATGGTGATCAAACAAGTAAGATAACCCCAGATGTCTTGGAGCTCGAAGGGTGTACACTAGATGAGGCTTATGCCACAAGGACTATCCTTTTTCTAAAAGAAAATGGGACTTTAAAGCCATTGGCCATCGAATTAAGTTTACCACATCCCAATGGAGATCAATCAGGAGCTTTGAGTCAAGTCATCTTACCTGCAAATGAAGGCGTTGAAAGTACTATTTGGCTACTAGCCAAAGCTTATGTGGTCGTAAATGACTCTTGCTATCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTGATTGAACCATTTGTTATAGCAACAAATCGGCAACTTAGTGTGCTTCACCCAATTTATAAACTCTTGTCTCCTCACTATCGTGATACCATGAACATCAATGCACTTGCCAGACAATCTCTAATTAATGCCGATGGCATAATAGAGAAAACATTTTTGCCTTCAAAGTATGCTGTGGAAATGTCNTCAGCGGTTTATAAGAATTGGGTTTTCCCCGATCAAGCACTCCCTGCTGATCTNATCAAGAGAAACATGGCAGTTAAGGATCCATCTTCCCCACATGGACTTCGTCTTGTAATAGANGACTACCCTTATGCTGTTGATGGGCTAGAGATATGGGCCACTATTAAAACATGGGTCCAAGATTATGTCTCATTGTATTATGCAACAAACAACGATGTCAAAATTGACTCTGAACTCCAACATTGGTGGAAAGAAGCTGTGGAGGTAGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCCAAGTTACATACAATTGAAGAGCTTATTGAAGTTTGCACTATCATCATATGGACTGCTTCAGCACTTCATGCTGCTGTTAATTTTGGACAATATCCTTATGGGGGTTTTATTTTAAACCGTCCAACTCTTAGTAGAAGATTACTNCCTGAGAAAGGTACTGCACAATATGATGAAATGGTGAAGAGTCACCAAAAGGCTTATTTGAGAACAATTACACCCAAGTTTCAGACTCTTATTGACCTTTCGGTGATAGAGATCTTGTCAAGGCATGCTTCTGATGAGGTCTACCTTGGACAAAGGGAGAATCCACATTGGACCTCTGATTCAAGAGCATTACAAGCCTTTCAAAAGTTTGGAAACAAACTGGCAGAAATTGAGGCAAAACTTGCAAACAAGAACAATGATGCAACTCTAAGCAATCGGATTGGGCCGGTTCAATTGCCATACACTTTGCTTCATCCCACTAGTGAAGAAGGGTTGACTTGTAGAGGAATTCCCAATAGCATCTCTATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	205577	210754	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008252.1	PF01477.18	PLAT	73	170	5.60E-18
Glyur000115s00008252.1	PF00305.14	Lipoxygenase	181	423	5.70E-109
Glyur000115s00008252.1	PF00305.14	Lipoxygenase	421	817	1.70E-208

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.037

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.017
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.023
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.102
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.024