Gene detail

Gene detail information of Glyur000115s00008251

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	P09918.1	RecName: Full=Seed linoleate 9S-lipoxygenase-3; AltName: Full=Lipoxygenase-3 [Pisum sativum]
Swissprot	tr\|P09918\|LOX3_PEA	Seed linoleate 9S-lipoxygenase-3
trEMBL	tr\|G7IS30\|G7IS30_MEDTR	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000115s00008251.1
ATGTTTTCAGGCGTGACGGGGATGTTGAATAGGGGGCATAAGATAAAAGGGACGGTGGTGTTGATGCGAAAGAATGTGTTGGACATCAATAGCTTAACCAGTGTTGGGGGAATCGTGGGTCAAGGCCTCGACATACTTGGTTCCACACTCGATAATCTAACCGCTTTCTTGGGCCGATCTGTCTCNCTTCAGTTGATTAGTGCAACCAAAGCTGATGGAAACGGGAAAGGGAAAGTTGGAAAGGCTACTTTTTTGGAAGGTATAATTTCATCGTTACCAACATTGGGAGCAGGCCAATCTGCATTCAGAATCCATTTTGAATGGGATGATGACATGGGAATTCCCGGAGCATTTTATATCAAGAACTTTATGCAAACTGAGTTTTTCCTCACATATCTTCCAAGTGAAACACCAGCTCCATTAGCCCAGTATAGAGAAGAAGAGTTGCGTAATTTAAGAGGAGATGGAACAGGAGAGCGCAAAGAATGGGAAAGGATCTATGATTATGATGTCTACAATGATTTAGGAGATCCAGATAAAGATCCCAATAGTGAGAGTAGGAGCGACTTTGTGTATCTTCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCCTCAGATTTTCTTACTTATGGACTAAAAGCTGTGTCCCAAAATGTCGTCCCAGCATTAGAATCTGTGTTCTTTGATTTAAATTTCACACCCAATGAGTTTGATAGCTTTGATGAAGTTCGTGGACTCTATGAGGGTGGAATTAAGTTGCCAACANATGTGCTTAGCAAGATTAGCCCATTACCTGTGCTCAAGGAAATCTTTCGAACTGATGGTGAACAATTCCTCAAGTACCCACCACCTAAAGTAATTCAAGTGAGTAGGTCTGGATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACTTGATTCGTTGTCTTCAGGAGTTCCCTCCACGAAGCAAGCTAGATAGTCAAGTTTATGGTGACCATACTAGTAAAATAACCACAGAACACNTAGAGCCTAACTTAGAAGGGCTCACTGTAGATAAGGCAATTCAAAACAAGAGATTGTTCCTGTTGGATCATCATGACTCAATCATGCCATATTTAAGGCGAATAAACTCAACATCCACAAAGGCTTATGCTACAAGAACCATCCTTTTCTTGAAAGATGACGGAACTTTAAAGCCACTGGCCATAGAGTTGAGTTTGCCACATCCCCAGGGTGATCAACTTGGTGCTGTTAGTCATGTTTATCAGCCTGCAGAAGAAGGTGTTGAAAGTTCTGTTTGGCTACTAGCTAAGGCTTATGTAGTTGTGAATGACTCGTGTTATCATCAACTTGTCAGCCATTGGTTAAATACNCATGCAGTTGTTGAGCCATTTGTCATAGCAACTAATAGGCACCTCAGTGTTCTTCACCCTATTTATAAACTTTTGTATCCTCACTATCGTGACACCATGAATATAAATTCCCTTGCTCGACAATCCCTGGTCAACGACGGTGGCATTATTGAAACAACATTTTTGTGGGGAAGGTATTCTATGGAAATGTCTGCTGTAATTTACAAGAATTGGGCTTTTCCAGAGCAAGCATTACCTGTTGATCTTATAAAAAGAGGGATGGCAATTGAGGATCCTGCTTCCCCTCATGGCATTCGACTTGTGATAGAGGACTACCCTTATGCTGTTGATGGATTGGAGATTTGGGCTGTTATCAAAACATGGGTCCAAGACTATGTCTCCTTGTACTACCCATCAGATGACACACTTAGACAAGATTCTGAACTTCAAGCTTGGTGGAAAGAGTTGGTTCAAGTGGGTCATGGTGACAAGAAAAATGAGCCATGGTGGCCTAAGATGCAATCTTGTGAAGAATTAATTGAAGCTTGCACTATCATCATATGGACTGCTTCAGCTCTTCATGCAGCAGTTAACTTTGGACAGTATCCTTATGGAGGTTTAGTCTTAAACCGTCCAACTCTTAGTAGGAGACTCATGCCNGAGAAAGGATCTGCTGAGTATGATGAGCTAGTCAAAAGTCCACAAAAGGCTTACTTGAAGACAATTACACCAAAGTTTCAGACCCTTATTGACCTTTCTGTTATAGAAATCTTGTCAAGGCATGCTTCTGATGAGTTGTACCTTGGGGAGAGAGATAACCCAAATTGGACATCGGATACAAGGGCATTAGAGGCCTTTAAGAAGTTTGGAAACAAGCTAGCAGAAATTGAGAAAAAACTCACTCAGAGAAACAATGATGAGAAACTCAGAAACCGTCATGGACCAGTTCAAATGCCTTATACTTTGCTTTATCCTTCTAGTGAGGAAGGATTAACCTTTAGAGGAATTCCCAACAGTATCTCTATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	198278	202639	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008251.1	PF01477.18	PLAT	72	133	9.80E-06
Glyur000115s00008251.1	PF00305.14	Lipoxygenase	138	777	1.2e-316

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.046
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.129
SRR1811619	moderate drought stress	0.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.960
DRR006520	Root Summer glycyrrhizin high producing strain	0.956
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	1.470
DRR006524	Root Summer glycyrrhizin low producing strain	1.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.407

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.657
SRR2868004	Drought Stress (root)	6.688
SRR2967015	Control (root)	5.551

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.080
SRR9715740	Leaf	0.371
SRR9715741	Leaf	0.183
SRR9715739	Root	0.021
SRR9715742	Root	0.293
SRR9715743	Root	0.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.060
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.093
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.122
SRR8400027	Control - Root	6.275