Gene detail

Gene detail information of Glyur000115s00008249.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72740.2	6.00E-28	Homeodomain-like/winged-helix DNA-binding family protein
NR	XP_007135518.1	2.81E-117	hypothetical protein PHAVU_010G136100g [Phaseolus vulgaris]
Swissprot	tr\|F4I7L1\|TRB4_ARATH	4.00E-68	Telomere repeat-binding factor 4
trEMBL	tr\|V7APC8\|V7APC8_PHAVU	1.00E-117	Uncharacterized protein {ECO:0000313\|EMBL:ESW07512.1}

Sequence

Transcript Sequence

>Glyur000115s00008249.1
CACGCGACACCTGGGAAAAGCTTGATANTGTAAAAATGGTAATTAAGTGGAATCCCTTTAAAAATGCCATAAAAATTCAAGAGTTGTAACAGGGCCAATCGAAAATCTGGAAACGCAACGCATTGTTTTTGTTGGTAATCGATGTAGCAGTGAGAGGAAGAGAAGCTGAAAGTTTTAAATCGAAATAGAGAGTAGAGTAGAGAGTGTTGAAATAGATGGGAAATCAGAAGCAGAAGTGGACGGCGGAGGAAGAAGACGCGTTGCAACGCGGCGTTCAGAAGCACGGTGCNGGTAAGTGGAAAAACATCCTCAAAGACCCCGAGTTCGCTGCTTCCCTCACCAACCGTTCCAACATCGACCTCAAGGATAAATGGAGAAATTTAAATGTTGGCAATGGTCAAGGCTCTAAAGACAAGTCGAGGACTCCCAAGACCAAACCAATAGTTCCTCCTCCTGCTCCTTCTCCAGCAAATGCTACTCCTGCTACTGCTCCTGCTCCCTCTCCTGCTTCAGTTCCTACTCCGCAAATTGTTACTCCTTCCCCTCAATCTCAATCTCAATCTCAAAGTCACCATTCTTCTCAAAATGATCACGATGACAATATTCCTCCAAGGTATAATGCAATGATTTTTGAAGCTTTGGCAACAATCAAAGATACTAATGGTTCTGACATAAATGCCATTGTCAGTTTCATCGAGAAAAAACACAAAGTTCCTCAAAATTTCAGAAGGGCATTAGGTTCAAGGTTGCGGAGGCTTGTTAATCAAGGGAAGCTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAGGACACCCCATTGGGGACGAAGTCACCTGCCCCTAAATCACCTGTACTAAAACAAAAGGATGTCTGGCCACAGCAATCACCAGCATCTAGTTTTTTGACATCTAATGAGACATTTAAGGATGCCGCCGATACTGCAGCCTACAGAGTTGCTGACGCTGAGAACAAATCATTTTTGGCCTCTGAGGCAGTCAAGGAGGTGGAAAAATTCTCAAAGATGGCTGAAGATATTGATTCAATGTTACAGCTTGCACAAGAAGTTTTTGAACAATGTTCGCATGGTGAAATGATCCGCTTGGCTTAGGCTCGTAAATTAAGGTCGATAGTATTTTGGTTTGTATATGTAAATTCGTCCATCCAGTGAAAAGTATTTTAAAATGATCCCCCCCCCCCCAAATAGAATTTTTAAATACCAGTTAGCATTTTTTTTAAGTCATGCTTTGATGCCGATATGTCTTCCTTGTTCTGTAGATATTATCCATCGAAACTGTCTTTCATTTGATAATCACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	187572	190846	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008249.1	PF00249.26	Myb_DNA-binding	5	56	2.50E-10
Glyur000115s00008249.1	PF00538.14	Linker_histone	132	195	1.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.935
SRR1783600	control	24.605
SRR1783602	moderate drought stress	23.988
SRR1811619	moderate drought stress	24.194

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.237
DRR006520	Root Summer glycyrrhizin high producing strain	25.604
DRR006521	Root Winter glycyrrhizin high producing strain	17.055
DRR006522	Root Winter glycyrrhizin high producing strain	16.916
DRR006523	Root Summer glycyrrhizin low producing strain	35.855
DRR006524	Root Summer glycyrrhizin low producing strain	34.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.755

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.839
SRR2868004	Drought Stress (root)	19.315
SRR2967015	Control (root)	19.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.899
SRR9715740	Leaf	22.603
SRR9715741	Leaf	13.190
SRR9715739	Root	9.766
SRR9715742	Root	16.938
SRR9715743	Root	14.151

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.627
SRR8749028	MeJA induced 9h	37.375
SRR8749029	MeJA induced 9h	39.565
SRR8749030	Uninduced	41.824
SRR8749031	Uninduced	24.465
SRR8749032	Uninduced	15.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.012
SRR8400027	Control - Root	23.111