Gene detail

Gene detail information of Glyur000115s00008245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17500.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_003597568.1	0	Aminophospholipid ATPase [Medicago truncatula]
COG	NP_389448.1	9.00E-24	calcium-transporting ATPase [Bacillus subtilis subsp. subtilis str. 168]
Swissprot	tr\|Q9LNQ4\|ALA4_ARATH	0	Putative phospholipid-transporting ATPase 4
trEMBL	tr\|G7IS39\|G7IS39_MEDTR	0	Phospholipid-transporting ATPase-like protein {ECO:0000313\|EMBL:AES67819.1}

Sequence

Transcript Sequence

>Glyur000115s00008245.1
CACAAACACACACGCACGCACGCCCCCTTCTCTCTCTCTCTCTCTTCCTCTCTAGTTACGGAACTTCTCTCTCTAGACTTTGTCTTCTTCCTCAACCTGCAAAGCACACAATAATCATATTCACAATAATCGTCGTTTTCTACNTATCCGTGTCATTTACTTTGTTCCAGTTCTTGCCGTCCTCGACATGGACGACGCCACTCACCTTCGGCTATAGAAAAGCAAATTGGGGATAAAGGGGAGCGTTTGATTGTTCCCTAGTGGGCAATATTTACGTTTTCTTATTGGNGGGTATGTGTGAGCTATAAACTACCTTGCGCTAAAATGGCACGGGGGAGGATCAGGGCAAAGCTCCGCAGGAGCAATCTTTACACATTCGGTTGCCTTCGGCCAACTACCACTGAGGAGGCGCCTCATCCACTTCAAGGTCCAGGATACTCGAGAACCGTGTATTGCAACCAGCCCCAGCTCCATGAAAAGAAATTTCTATATTACTGCAAGAATGATATATCAACGACCAAATACAATGTTATCACTTTTTTTCCTAAGGCACTATTTGAACAATTTCGAAGGGTTGCTAACATATACTTCCTGTTGGCTGCTTGCCTCTCGGCCTCTCCAATTTCACCTTTCAGCGCGCTGAGCATGATTGTTCCTTTGGCGTTTGTTGTGGGGCTTAGCATGGCAAAGGAAGCATTGGAGGACTCGCGCAGGTTCCTTCAGGACATGAAAGTTAATCGCCGGAAAGTTGGTCTCCATAAAGGCAATGGCGTTTTTGGTCTCAGGTCGTGGCAGAAAATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGCGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGGCTACCCTTTCTCTTGATAAGGATGGAGCTTTCAAGGATTTCTCTGGAACAATACGCTGTGAAGATCCAAATCCCAATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAAGTTTATCCTCTNGATCCTGGTCATATTCTCCTCCGAGACTCNAAGCTTAGGAACACTGATTATGTCTATGGGGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAAAAAAAGATGGATTATATCATATACGCTCTTTTCACTGTCCTTATATTGATATCCTTTNTTAGTTCCATAGGATTTGTTGCTAAGACTAAGTACCAAGCCACAAAGTGGTGGTATTTACGGCCCGACAATATTGAATATCAGTATGATCCTACAAAAATTGGATTGGCTGGGATGAGCCATCTGATAACTGCACTTATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCAATTGAGCTTGTGAAGGTATTACAGGCAACCTTTATNAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCTGCTGATGCGCGGACNTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCCTATGGTGTGAGATCCAGTGAAGTTGAANTTGCTGCAGCAAAGCAGATGGCTTCTGATCTCGAGGAGCAGGATATGGATCTCTCTAATTTCCCCATGCATAAGAAGAGTAAAGGGCCACGGGNAAATGTTAGAAAAGCTGAAGAAATTGAACTTGATACTGTTGTCACTTCTAAGGGTGATGAGGTTCGAAGGCCTGCCATAAAGGGATTTGGTTTTGAAGATGGCCGTCTNATGAATTGTAACTGGTTGAAAGATTCCAATGCTGATGTGATTTTGTTGTTTTTCCGGATATTAGCAGTTTGCCACACTGCAATTCCGGAGCTGAATGAGGAGACTAACAGTTGTACATATGAAGCTGAGTCACCTGATGAAGGGNCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACTCAATCAACTGTTGTTGTACNAGAAAGATTTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTTATTGTGCGTGATGAGGAGGGAAGCATTATTCTTTTGTGCAAAGGAGCTGACAGTATCATATTTGATCGACTATCNAAGAATGGAAAAATGTATTTGGAGGCTACTACGAGACATTTGAATGAATATGGAGAAGCAGGTTTGAGAACACTAGCCCTGGCTTACAGAAAGCTTGATGAACAAGAGTACTCTGATTGGAATAATGAGTTTCAGAAAGCCAAGACANCTGTTGGGTCTGACCGAGAGGCAATGCTTGAGAAGGTATCGGATAGTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTGAAGATCTGGGTCTTGACAGGAGATAAGATGGAAACTGCAATCAACATTGGATTCGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAGTCTGTATCACTACTACGAATTCAGATTCACTACCCAATGATGGGAAAGAGGTCATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTTACAAATGATAAAGCTGGANAAGGATCCACATGCTGCGTTTGCATTAATTATTGATGGGAAAACTCTAACGTATGCTTTAGAAGATGATATCAAGCACCAATTTTTGGGATTAGCTGTTGAATGTGCATCTGTCATTTGCTGTCGCGTGTCTCCCAAGCAAAAGGCCTTGGTAACAAGGTTAGTGAAAGAAGGAACCGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCTATTGCCCAATTTCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCAGTGTATGATGATCGGTACATGATATTGTTTAACGTTGTTCTAACATCGTTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGTTGGATGGGGAATGGTCTTTATTCCTCCCTCATCNTCTTCTTCCTTGTCATCATCATCTTCTACGATCAAGCATTTCGTGCAANTGGCCAGACTGCAGACATGGATGCTGTTGGTACCACAATGTTCACTTGCATCATCTGGACTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTTACATGGATTCAACACCTCTTTGTGTGGGGTAGCATAACCACTTGGTACCTCTTTCTTTTGTTATTTGGCATGCTTCCTCCATACTATTCCAAGACCGCATACCAACTATTGGTTGAAGTTCTTGCTCCTGCTCCTATTTATTGGACCGCAACCCTTTTAGTAATAGTTACATGCAATCTTCCTTATCTTGCCCACATATCCTTCCAAAGATGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGATATTGAAGATCAGCACATGTGGAAGAGGGAGCGGTCTAAAGCAAGACAGGAAACAAAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATCNCGCAGTTGAAAGGGAGGCTGCAGAAGAAGCAATCTTCAATGGAGGCTTTGTCTCCATCATGACCGTTACAAAAGAATAATGTAATAGTTTTCATTCTTTTTAGGGTTTGTGGTTTTTTGGTTTTATGNTCTAGCCTCATTTAAATTCTTTTCACATAATTATGTCGTTTATGAAGTCCCTTTCATTAAGGGGAAAAAAGAGAGCATAGGAGCCGTTGTAACATATTTAAGTAGAAGAGCTCACCAAATTAGTCAATTCTGAATGATCGAAGTGTAATTCTCACATATCAAATGGTTACAATTCAAGTAATATTGAAGAAATGAAAGCAGCTACATGGTGTAAGTGTGTAACCACCAACTGGTGTTATATTTTCTGTTTTCTTTGGCGG

Protein Sequence

>Glyur000115s00008245.1
MARGRIRAKLRRSNLYTFGCLRPTTTEEAPHPLQGPGYSRTVYCNQPQLHEKKFLYYCKNDISTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSALSMIVPLAFVVGLSMAKEALEDSRRFLQDMKVNRRKVGLHKGNGVFGLRSWQKIMVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATLSLDKDGAFKDFSGTIRCEDPNPNLYTFVGNFEYEHQVYPLDPGHILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYALFTVLILISFXSSIGFVAKTKYQATKWWYLRPDNIEYQYDPTKIGLAGMSHLITALILYGYLIPISLYVSIELVKVLQATFXNQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVEXAAAKQMASDLEEQDMDLSNFPMHKKSKGPRXNVRKAEEIELDTVVTSKGDEVRRPAIKGFGFEDGRLMNCNWLKDSNADVILLFFRILAVCHTAIPELNEETNSCTYEAESPDEGXFLVAAREFGFEFYRRTQSTVVVXERFSASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGSIILLCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDEQEYSDWNNEFQKAKTXVGSDREAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQVCITTTNSDSLPNDGKEVIKGNILNQITNALQMIKLXKDPHAAFALIIDGKTLTYALEDDIKHQFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDRYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIXFFLVIIIFYDQAFRAXGQTADMDAVGTTMFTCIIWTVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLFGMLPPYYSKTAYQLLVEVLAPAPIYWTATLLVIVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWKRERSKARQETKIGFTARVEAKIXQLKGRLQKKQSSMEALSPS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	161202	168465	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008245.1	PF00122.15	E1-E2_ATPase	155	387	3.90E-15
Glyur000115s00008245.1	PF12710.2	HAD	421	891	4.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.023
SRR1783600	control	16.212
SRR1783602	moderate drought stress	15.378
SRR1811619	moderate drought stress	15.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.330
DRR006520	Root Summer glycyrrhizin high producing strain	13.211
DRR006521	Root Winter glycyrrhizin high producing strain	26.093
DRR006522	Root Winter glycyrrhizin high producing strain	25.177
DRR006523	Root Summer glycyrrhizin low producing strain	19.341
DRR006524	Root Summer glycyrrhizin low producing strain	19.229
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.278
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.360
SRR2868004	Drought Stress (root)	53.362
SRR2967015	Control (root)	51.073

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.961
SRR9715740	Leaf	9.752
SRR9715741	Leaf	12.033
SRR9715739	Root	2.335
SRR9715742	Root	25.361
SRR9715743	Root	20.478

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.221
SRR8749028	MeJA induced 9h	29.322
SRR8749029	MeJA induced 9h	16.228
SRR8749030	Uninduced	23.977
SRR8749031	Uninduced	30.314
SRR8749032	Uninduced	18.177

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.705
SRR8400027	Control - Root	40.222