Gene detail information of Glyur000115s00008240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31200.1 | 1.00E-07 | actin depolymerizing factor 6 |
| NR | NP_001236100.1 | 8.76E-16 | uncharacterized protein LOC100500047 [Glycine max] |
| Swissprot | tr|Q9ZSK2|ADF6_ARATH | 3.00E-15 | Actin-depolymerizing factor 6 |
| trEMBL | tr|K7N4T3|K7N4T3_SOYBN | 2.00E-16 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G35190.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 122217 | 122612 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008240.1 | PF00241.15 | Cofilin_ADF | 6 | 45 | 4.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.530 |
| SRR1783600 | control | 5.849 |
| SRR1783602 | moderate drought stress | 4.439 |
| SRR1811619 | moderate drought stress | 5.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.808 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.303 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.805 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.777 |
| SRR2868004 | Drought Stress (root) | 0.804 |
| SRR2967015 | Control (root) | 0.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.830 |
| SRR9715740 | Leaf | 0.150 |
| SRR9715741 | Leaf | 0.434 |
| SRR9715739 | Root | 0.590 |
| SRR9715742 | Root | 0.064 |
| SRR9715743 | Root | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.167 |
| SRR8749028 | MeJA induced 9h | 0.300 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.057 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.377 |
| SRR8400027 | Control - Root | 1.691 |