Gene detail information of Glyur000115s00008236 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26180.1 | 2.00E-36 | IQ-domain 6 |
| NR | KHN30061.1 | 5.39E-176 | Protein IQ-DOMAIN 1 [Glycine soja] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 2.00E-21 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|K7M3M4|K7M3M4_SOYBN | 3.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G42440.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 97049 | 99478 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008236.1 | PF00612.22 | IQ | 87 | 106 | 0.00012 |
| Glyur000115s00008236.1 | PF00612.22 | IQ | 109 | 126 | 0.067 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.180 |
| SRR1783600 | control | 1.212 |
| SRR1783602 | moderate drought stress | 1.138 |
| SRR1811619 | moderate drought stress | 1.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.806 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.784 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.525 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.304 |
| SRR2868004 | Drought Stress (root) | 3.295 |
| SRR2967015 | Control (root) | 4.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.356 |
| SRR9715740 | Leaf | 0.122 |
| SRR9715741 | Leaf | 0.396 |
| SRR9715739 | Root | 1.134 |
| SRR9715742 | Root | 0.855 |
| SRR9715743 | Root | 1.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.251 |
| SRR8749028 | MeJA induced 9h | 8.880 |
| SRR8749029 | MeJA induced 9h | 3.249 |
| SRR8749030 | Uninduced | 1.269 |
| SRR8749031 | Uninduced | 0.831 |
| SRR8749032 | Uninduced | 0.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.379 |
| SRR8400027 | Control - Root | 6.172 |