Gene detail

Gene detail information of Glyur000115s00008228

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19480.3	2.00E-103	nucleosome assembly protein 1;2
NR	KHN30054.1	0	Nucleosome assembly protein 1-like 1 [Glycine soja]
Swissprot	tr\|Q53WK4\|NAP1B_ORYSJ	3.00E-147	Nucleosome assembly protein 1;2 (Precursor)
trEMBL	tr\|I1MD00\|I1MD00_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G02860.1}

Sequence

Transcript Sequence

>Glyur000115s00008228.1
TTCAGATTTTGTAGAAAATAAAAAAGGTCCCTTCCTCTGTTCTGTATCCAATCCAATATCCATTCATTTCTCACTTTCCCTCCTCGTTGGCAGTTTTCGTGCTCCATTTTCTCGCCTCCCAAACACTGCTTCCTTCCTTCAACATGTCCGATCACGCCGCTGATCTACCCGCTGCCGCTGCCGCTCTTAGTGCTGAGGATCGTGCTGGTCTCGTGAATGCACTCAAGGATAAGCTTCAGCTCTTGGCTGGGGAGCATGTGGATATCCTNGGGACACTGTCACCCGAAGTCAGGCAACGCGTGGTGGTTCTCAAAGATCTGCAGAGCCAACATGATGAGTTGGAGGCCAAGTTTTTAGAGGAGCGAGCTCACTTGGAAGCTAAATATCAAAAGCTTTATGAACCACTTTACACAAAGAGGTATGAGATTGTCAATGGCGTGGTTGAGGTTGATGGAATTACAAATGAAGCACCGATGGAAGAAGAAAACAAAGCTGCTGAAGAAAAAGGAGTGCCTGACTTTTGGCTAACTGCGATGAAGACTAATGAAATACTGGCTGAAGAGATCACTGAACGTGATGAGGGGGCCCTGAAGTATCTTAAAGATATCAAGTGGTGTAGAATCGACAATCCTAAGGGTTTCAAGCTGGAGTTTTGTTTTGATTCTAATCCTTATTTCAAAAATTCCGTGCTAACAAAAACATATCACATGATTGAAGATGATGATCCCATATTAGAGAAAGCAATAGGAACGGAAATTGAGTGGCATCCAGGAAAGTGCTTGACACAAAAGGTTCTTAAGAAGAAGCCCAAGAAAGGATCAAAAAATGCCAAACCGATCACAAAAACAGAAAAATGTGAAAGTTTCTTCAACTTTTTCAACCCTCCCCAGGTCCCCGAGGATGATGATGATATAGATGANGATGTTGTTGAAGAGCTCCAGAATTTGATGGAACATGATTATGACATTGGTTCTACAATCCGAGACAAAATTATTCCTCATGCTGTGTCATGGTTCACGGGGGAGGCTGTAGAGAGTGATTTTGAGGATATAGAAGCAGATGAAGATGAAGATGAAGATGATGAAGATGGTGATGGGGATGAAGATGAAGAGGATGAGGATGATGAGGAAGAGGAAGAGGAAGATGAAGGGAAGAGCAAGAGGAAGAGTGGTCGCAGAGCCCAACCCGGTAAAGATCAGCCAACGGAGCGCCCTCCTGAATGCAAGCAGCAGTAGTGTTTAGTTGTGTGCAACAATCCTGGATATAATTAGTGACAGTGGAGTAATTACTGTAGATTATATCGGTTATTTCGGTCATAAGCTGCAATTTTAGATTGTTATTGTCCGGTCTTTTCTCTCTGTCGTTTTTTTGTTAATATTCNGGCTTGGGATTCTTGGGTTGCTGTCGGTGTCGGTTGCCCTGTGATATGGATTTCATTTCTTTCTCTCTCCTTTTTTTTTTCAAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	62053	65549	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008228.1	PF00956.13	NAP	50	295	1.00E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.532
SRR1783600	control	25.474
SRR1783602	moderate drought stress	33.753
SRR1811619	moderate drought stress	32.798

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	75.278
DRR006520	Root Summer glycyrrhizin high producing strain	73.422
DRR006521	Root Winter glycyrrhizin high producing strain	98.197
DRR006522	Root Winter glycyrrhizin high producing strain	94.911
DRR006523	Root Summer glycyrrhizin low producing strain	63.055
DRR006524	Root Summer glycyrrhizin low producing strain	64.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.794
SRR2868004	Drought Stress (root)	103.793
SRR2967015	Control (root)	119.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.503
SRR9715740	Leaf	43.750
SRR9715741	Leaf	48.831
SRR9715739	Root	8.628
SRR9715742	Root	26.714
SRR9715743	Root	22.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.416
SRR8749028	MeJA induced 9h	74.808
SRR8749029	MeJA induced 9h	63.002
SRR8749030	Uninduced	68.243
SRR8749031	Uninduced	66.392
SRR8749032	Uninduced	42.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.386
SRR8400027	Control - Root	68.098