Gene detail

Gene detail information of Glyur000115s00008227.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13790.2	0	Glycosyl hydrolases family 32 protein
NR	XP_003546695.1	0	PREDICTED: beta-fructofuranosidase, cell wall isozyme-like isoform 1 [Glycine max]
COG	YP_008376507.1	2.00E-50	beta-fructosidase, family GH32 [Halorhabdus tiamatea SARL4B]
Swissprot	tr\|Q43089\|INV1_PEA	0	Beta-fructofuranosidase, cell wall isozyme (Precursor)
trEMBL	tr\|I1MCZ9\|I1MCZ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G02850.1}

Sequence

Transcript Sequence

>Glyur000115s00008227.1
ATGGCCATCTCTCCAATTTTGTTGTTGGCTATCTTCTCTCTCATTTATGGCAATGGTGTTCTTCCCATTGAAGCTACCCACCATGTCTACAGAAATCTTCAGAGCTTGTCTTCTGATTCCTCGAATCAACCTTATAGAACTGCTTATCACTTTCAACCTCTCAAGAATTGGATAAACGGACCAATGAGGTACGGAGGACTATACCATCTGTTTTACCAATACAATCCCAAAGGTGCTGTTTGGGGCAATATTGTGTGGGCCCACTCTGTATCAAAGGATCTAGTGAATTGGGCCCCATTAGATCATGCCATCCACCCTTCTCAGCCGTCTGATATAAATGGATGCTGGTCAGGGTCAGCCACAATGCTCCCTGGTGGCAAGCCAGCCATTTTATACACAGGAATTGACCCCATGGACCGCCAAGTCCAAAACTTAGCCATCCCCAAAAACATGTCTGACCCATTACTTAGGGAATGGACCAAGTCACCCAAAAACCCATTAATGGCACCAAATATTGCCAACAAGATCAATTCAAGCTCATTTAGAGACCCTACCACTGCTTGGCTAGGCAAAGATGGGTATTGGAGGGTGCTGATTGGAAGCAAAATAGACAGAAGGGGAGTGGCAATTTTGTACAAGAGCAAAAACTTTGTTAATTGGGTTCAATCCAAACACCCTTTGCATTCAGCCCAAGGCACAGGAATGTGGGAGTGCCCTGATTTCTATCCAGTTCTGAATAAGAGCCCATTTAGCATTGGTATTGACACATCTGTGAATGGTGGTGATGGTGTTATGCATGTGCTCAAGGTTAGCTTGGATGATACAAAACATGATCACTATTTGATTGGGACTTATGACACTGCCAAGGATATCTTTAATCCGGATAACGGATTTGAGGATAATAACCAATCTGTCTTAAGATATGATTATGGAAAGTTTTATGCCTCAAAAACGTTTTTTGACGATGGGAAGAACAGAAGGGTCTTATTGGGTTGGGTTAACGAGTCCTCTAGTGTTGCGGATGATATCAAGAAAGGATGGTCTGGAATCCATACTATTCCAAGGGCTATCTGGCTTCATAAATCGGGGAAACAGTTGGTTCAATGGCCGGTGGCGGAAATTGAAAACCTACGCGTCAACCAAGTCAAGTGGCCCACCAAGGTGATCAAGGGAGGTGAACTGCTTCAAGTTACTGGTGTTACTTCAGTACAGGCTGATGTTGAAATTTCATTTGAAGTGAATGAGTTTGGAGAGGCCCAAGTATTGGACCATTGGATAGACCCCCAAATTCTGTGTGGTCGAAAGGGTGCAGCCGTAAAAGGTGGTTTGGGACCATTTGGTCTGCTAGCTTTTGCTTCTCAAGGCTTGCAAGAGTATACAGCAGTGTTTTTCAGAATATTTAGATACCAACACAAAAATTTGGTTCTCATGTGCAGCGACCAAAGCAGGTCTTCATTGAATAAAGATAACGATATGACCTCTTATGGGACTTTTGTCGATGTGGACCCTCTTCATGAGAAGCTGTCATTGAGAAGTTTGATTGATCACTCAGTTGTGGAGAGTTTTGGGGGAGAAGGAAGGGCTTGCATCACAGCCAGAGTTTATCCCACATTAGCAATCCATGATAAGGCAATGCTATACGCTTTCAATAATGGAACTGCTGCTGTCAAGATCACAAGATTGAGTGCTTGGAGCATGAAGAAAGCAAAAATCCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	58240	61343	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH32

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01193	INV, sacA	EC:3.2.1.26	Galactose metabolism	map00052
			Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008227.1	PF00251.15	Glyco_hydro_32N	50	370	1.90E-108
Glyur000115s00008227.1	PF08244.7	Glyco_hydro_32C	443	526	7.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.825
SRR1783600	control	3.000
SRR1783602	moderate drought stress	2.467
SRR1811619	moderate drought stress	2.452

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.129
DRR006524	Root Summer glycyrrhizin low producing strain	0.129
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.376
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.439
SRR2868004	Drought Stress (root)	24.987
SRR2967015	Control (root)	18.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.057
SRR9715740	Leaf	1.834
SRR9715741	Leaf	18.284
SRR9715739	Root	0.260
SRR9715742	Root	0.473
SRR9715743	Root	0.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.189
SRR8749028	MeJA induced 9h	106.533
SRR8749029	MeJA induced 9h	40.018
SRR8749030	Uninduced	277.669
SRR8749031	Uninduced	171.469
SRR8749032	Uninduced	259.597

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.898
SRR8400027	Control - Root	3.250