Gene detail

Gene detail information of Glyur000115s00008220.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72990.1	0	beta-galactosidase 17
NR	XP_004486833.1	0	PREDICTED: beta-galactosidase 17-like [Cicer arietinum]
COG	YP_004643630.1	3.00E-140	beta-galactosidase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q93Z24\|BGA17_ARATH	0	Beta-galactosidase 17 (Precursor)
trEMBL	tr\|I1M5B6\|I1M5B6_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000115s00008220.1
ATAATTTCCTCAAGTTTTTTTCGAAGCTGGGGACTGAATGAGAATCCGACTGAAGACCAACGCTGAAGCTTCCAAACTGCTGGCGATGGCGAAGAAGCGAAGCTCCAAAGCCACCCTTTTCTTGATCTTCATCTCTTTCATGGCTNTTTGTGCCNTTGCTGTTCCTGTTTTCGATCCTCTTCCTTCTATCTCCTCTGATCACCATGCCCATCACTCTCATCCCAACAAAGTCAATAGGAAGTTTGAGATTGCAAGCGATATGTTCTGGAAAGATGGTGAGCCTTTTCAGATCATTGGTGGTGANTTGCATTATTTTCGAGTGCATCCAGAGTACTGGGAAGACAGACTGTTAAAAGCCAAAGCATTGGGCTTGAACACAATTCAGACATATGTTCCTTGGAATCTACATGAACCAACACCCGGGAAGCTTGTTTTTGAGGGTATTGCAAACATTGAATCGTTCNTCAACCTTTGCCACAAACTTGGTCTCCTTGTGATGGTTCGAGCCGGACCATACATATGCGCAGAGTGGGATTGGGGTGGTTTCCCAGGTTGGTTCTATTCCATGAACCCATCTCCAAAACCAAGATCATCTGATCCTACTTTTCTTCAACTGGTTGAAAGATGGTGGGGTAACCTGCTTCCAAAATTTGTTCCTCTCCTGTATGACAACGGAGGCCCTATAATAATGGTTCAGATTGAAAATGAGTATGGTTCTTATGGAGATGACAAAGCATATCTTCATCACCTGGTCACACTAGCTAGAGGTCATCTTGGGCATGATGCTATTTTATACACTACAGACGGAGGATCCAGGGAGAATCTTGAGAAAGGAACTATTCATGGGGATGCTGTCTTTTCAGCTGTTGACTTCACTACTGGTGATGATCCTTGGCCTATATTTCAGTTACAAAAGGAGTTCAATGCCCCAGGAAAATCACCACCTTTGTCAACCGAATTTTACACTGGGTGGCTTACACACTGGGGAGAGAAAATTGCCAAGACTGGTGCTGATTTTACAGCAGCTGCTCTTGAAGAAATTTTGCGAAAAAATGGTTCTGCAGTCCTATATATGGCGCATGGNGGGACAAACTTTGGATTTTATAATGGGGCAAATACTGGTGTAGATGAGGCTGACTACAAGCCTGATCTCACTTCATATGATTATGATGCGCCGATCAGGGAAGCTGGTGATGTTGACAATTCAAAATTCAATGCAATTCGGAGGGTTATAGCCCGATATAGCTCTGCTCCTCTTCCATCTATCCCCTCTAATAATGAAAAGACAAGATACGGACCAATCCACTTACAAAGAAAATCTTTGTTATTTGATATGTTTGATTCCACCAATTCCTCCAATGTGTTTGAATCAGAAAATCCAATGTCAATGGAGCATGTGGGCCAGTTGTTTGGTTTCTTATTGTATGTCACCGAATACAAAGCAAAGGGAGGCGAAAGAACTTTGTTCATACCAAAGTTGCATGACAGAGCTCAAGTATTTATCTCATGCTCTTCTGANAAAAGAGGTGCAAGGCCAACTTATGTTGGTACTATCGAAAGATGGTCAAATAACAAACTCAGCCTTCCCGAATTTAAATGCCATTCTAATGTCAACCTATATATTCTGGTTGAAAACATGGGTCGTGTAAATTATGGACCTTTCATCTTTGATAGGAAGGGATGGAAAATGTTCCCTATTCCTTTGCACAACCTAAATGAAGTGCCAACTTACAATCCCATCACGCAGGCTTCAGATTCTGCATTCAGTGTAATATCAGCTTCCAGGAAAAGGTTGATGTATAAGTCTGAAAATACTTCAAAAGAACCTGCTTTATATTCTGGCCGCTTCTCGATTGATAGTCAGGTCAAGGATACATTTATATCATTCAAAAACTGGGGAAAAGGCATTGCGTTTGTTAATGACTTCAATATAGGAAGATATTGGCCGTTGAGAGGACCACAGTGCAANCTCTACGTTCCTGCTCCAGTCCTTAAGCAAGGAGATAATTTTTTGGTAATCCTCGAGTTGGAATCTGCAGACCCCGAACTTGTGGTGCACACAGTTGATGAGCCAGAATTCACATGTGGGCATGGCTTTAGTGGGATGATGAACGTCCATCAGTTGTAATAATTAATTAATGTCGTGTCATAAAAGATGTGCTTTTTGAGTCCACACTGTATCCTCTTATTGGAAGCAATTTTATTTGAGGCAGATAGAGCAATGAGGGTAGTGTCTCTTCTATCTGAATTTTTCTTCATTATTAACATANTGTGAATGAAGATTATGCATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	15610	22425	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12309	GLB1, ELNR1	EC:3.2.1.23	Galactose metabolism	map00052
			Sphingolipid metabolism	map00600
			Glycosaminoglycan degradation	map00531
			Glycosphingolipid biosynthesis - ganglio series	map00604
			Other glycan degradation	map00511
			Lysosome	map04142

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004565 beta-galactosidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008220.1	PF01301.14	Glyco_hydro_35	76	401	1.30E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.746
SRR1783600	control	30.438
SRR1783602	moderate drought stress	37.283
SRR1811619	moderate drought stress	37.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.033
DRR006520	Root Summer glycyrrhizin high producing strain	45.965
DRR006521	Root Winter glycyrrhizin high producing strain	31.387
DRR006522	Root Winter glycyrrhizin high producing strain	30.645
DRR006523	Root Summer glycyrrhizin low producing strain	46.227
DRR006524	Root Summer glycyrrhizin low producing strain	46.032
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.493

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.122
SRR2868004	Drought Stress (root)	41.845
SRR2967015	Control (root)	39.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.832
SRR9715740	Leaf	13.556
SRR9715741	Leaf	17.961
SRR9715739	Root	10.109
SRR9715742	Root	26.221
SRR9715743	Root	23.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.654
SRR8749028	MeJA induced 9h	34.881
SRR8749029	MeJA induced 9h	20.363
SRR8749030	Uninduced	23.784
SRR8749031	Uninduced	13.644
SRR8749032	Uninduced	18.671

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.193
SRR8400027	Control - Root	39.286