Gene detail information of Glyur000115s00008215 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17620.1 | 4.00E-52 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_006597190.1 | 2.17E-131 | PREDICTED: uncharacterized protein LOC100819194 [Glycine max] |
| trEMBL | tr|I1MCZ5|I1MCZ5_SOYBN | 8.00E-132 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G02810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 593 | 1351 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008215.1 | PF03168.8 | LEA_2 | 113 | 216 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 146.691 |
| SRR1783600 | control | 146.667 |
| SRR1783602 | moderate drought stress | 224.711 |
| SRR1811619 | moderate drought stress | 222.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 134.010 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 134.471 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 73.295 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 71.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 236.574 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 236.563 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.821 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 95.266 |
| SRR2868004 | Drought Stress (root) | 97.032 |
| SRR2967015 | Control (root) | 86.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.901 |
| SRR9715740 | Leaf | 57.976 |
| SRR9715741 | Leaf | 53.473 |
| SRR9715739 | Root | 210.064 |
| SRR9715742 | Root | 171.429 |
| SRR9715743 | Root | 175.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.001 |
| SRR8749028 | MeJA induced 9h | 43.715 |
| SRR8749029 | MeJA induced 9h | 48.318 |
| SRR8749030 | Uninduced | 26.587 |
| SRR8749031 | Uninduced | 5.653 |
| SRR8749032 | Uninduced | 19.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 90.612 |
| SRR8400027 | Control - Root | 117.237 |