Gene detail information of Glyur000114s00010499.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59470.2 | 3.00E-05 | Far-red impaired responsive (FAR1) family protein |
| NR | KEH26293.1 | 4.15E-46 | FAR1 DNA-binding domain protein [Medicago truncatula] |
| trEMBL | tr|A0A072UB45|A0A072UB45_MEDTR | 2.00E-46 | FAR1 DNA-binding domain protein {ECO:0000313|EMBL:KEH26293.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00114 | 279359 | 287083 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000114s00010499.1 | PF03101.10 | FAR1 | 32 | 100 | 7.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.170 |
| SRR1783600 | control | 0.057 |
| SRR1783602 | moderate drought stress | 0.042 |
| SRR1811619 | moderate drought stress | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.266 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.486 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.131 |
| SRR2868004 | Drought Stress (root) | 0.257 |
| SRR2967015 | Control (root) | 0.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.613 |
| SRR9715740 | Leaf | 0.853 |
| SRR9715741 | Leaf | 0.826 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.069 |
| SRR9715743 | Root | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.209 |
| SRR8749029 | MeJA induced 9h | 0.317 |
| SRR8749030 | Uninduced | 0.070 |
| SRR8749031 | Uninduced | 0.021 |
| SRR8749032 | Uninduced | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.303 |
| SRR8400027 | Control - Root | 0.276 |