Gene detail

Gene detail information of Glyur000114s00010497

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45380.1	0	solute:sodium symporters;urea transmembrane transporters
NR	XP_003612583.1	0	Urea active transporter-like protein [Medicago truncatula]
COG	YP_875395.1	4.00E-133	urea active transporter [Cenarchaeum symbiosum A]
Swissprot	tr\|F4KD71\|DUR3_ARATH	0	Urea-proton symporter DUR3
trEMBL	tr\|G7K6S1\|G7K6S1_MEDTR	0	Sodium:solute symporter family protein {ECO:0000313\|EMBL:AES95541.1}

Sequence

Transcript Sequence

>Glyur000114s00010497.1
ATGGCTTCTCCATCACAGTGTCCACCCTTTGAGTTTTCTGGCAAGTATGGCTGGAGAAGCGGTATGTTGGGTCCCGCCACACCTCTGAATGGTTCAATACAGCAGGTAGAAGTGTTAAGACAGGGCTCATTGCTAGTGTCATTGTGTCTCAGTTGGGGGACTTCAGCACACATTGTATTCCTTTTCTTCTGCTTCCTGACAAATATAACTGTAACGGCTATGCTACTCCTTGGTGGTTCTGCTGTTGTAAATGCATTAACTGGAGTGAACATCTATGCTGCTAGCTTTCTAATACCACTTGGAGTAATTGTCTATACACTAGCTGGTGGACTAAAGGCCACATTCTTAGCAAGCTACATACATTCTGTCATAGTGCACATTGTTTTGGTCATTTTTGTCTACCTTGTCTATACGGCTAGCAGTGAGCTTGGTAGCCCCACTGTGGTTTACAACCGCTTGCTTGAGGTTGCAAGCAAATCAAGAACATGTCAGGATCCTATATCACACCATGGACAATCTTGTGGTCCTGTTAGTGGGAATCACAAAGGTTCTTACCTAACAATGCTTAGTTCAGGTGGCTTAGTTTTTGGGATCATAAACATTGTTGGCAACTTTGGCACTGTGTTTGTTGACAATGGATATTGGGTGAGTGCCATTGCTGCAAGACCTTCATCAACTCATAAGGGCTATTTGTTGGGAGGCTTGGTGTGGTTTGCAGTGCCATTTTCTTTGGCTACATCACTGGGTCTGGGAGCACTTGCCCTTGATTTACCAATAAATGAAAGTGAGGCAGGTCGTGGACTTGTTCCCCCTGCTACTGCTGTAGCTTTGATGGGGAAAGGAGGATCTATTCTTCTTCTTACCATGCTTTTTATGGCAATGACTTCTGCTGGTTCATCAGAGCTGATTGCTGTGTCCTCATTATGCACATATGATATCTACCGTACTTACATAAATCCCAATGCAAGTGGGAAGGAAATCCTCAAAGTGTCAAGAGGGGTTGTCCTAGGCTTTGGTTGTTTCATGGGGTTGCTAGCAGTTATACTGAACAAGGCTGGAGTTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTCTGATTGGCTCAGCAGTTCTTCCTATTGCTTTTATGCTCCTATGGAGAAAAGCAAATGCAATTGGGGCAATTCTTGGAACAGTGTTTGGTTGTGTTCTAGGAATAATCACATGGTTGTCTGTTACAAGAATAGAGTATGGTGAGATAAACCTTGATACAACTGGCAGAAATGCACCAATGCTTGCTGGGAACCTTGTCTCAGTACTAACTGGGGGAGCTGTTCATGCTATCAGCAGCATGTTGTGGCCTCAGAACTATGACTGGAGCACCACCAAGCAAATCACAGTGGTTGAAAAGGAAATGACTGACCTGCCAGCTGAAGAGTTCAAAGAACAGAAGCTGACAAGAGCCAAAGCTTGGATAGTGAGGTGGGGGGAGTTTAGCAAAGGCTACTTCTATTTCTGGGCAGTGATTTCCATAGGATGGGGTACTCTTGGTTCTGCTGTGATAATTGTTTTACCAATAGTAGAGAGCTGGGAAACCATCCAAACAGTCATTCTGGGCATGNTTACAAATGACAGGCTCATGGAAAAGGTGGAGGAGTTAAATTTCAAGCTGCACACAATCATGCAGGCAATACCAGAAGCTGAGAGACTTTACTTGCTTGACAAGGGTAAGGCCAAAAAACTAGAAGCCTCAGACTCAGAGCAGCAACAATCTTGTTCACTTCCTTTCCCCACTGTGGTTTACAACCGCTTGCTTGAGGTTGCAAGCAAATCAAGAACATGTCAGGATCCTATATCACACCATGGACAGTCTTGTGGTCCTGTTAGTGGGAATCACAAAGGTTCTTACCTAACAATGCTTAGTTCAGGTGGCTTAGTTTTTGGGATCATAAACATTGTTGGCAACTTTGGCACTGTGTTTGTTGACAATGGATATTGGGTGAGTGCCATTGCTGCAAGACCTTCATCAACTCATAAGGGCTATTTGTTGGGAGGCTTGGTGTGGTTTGCAGTGCCATTTTCTTTGGCTACATCACTGGGTCTGGGAGCACTTGCCCTTGATTTACCAATAAATGAAAGTGAGGCAGGTCGTGGACTTGTTCCCCCTGCTACTGCTGTAGCTTTGATGGGGAAAGGAGGATCTATTCTTCTTCTTACCATGCTTTTTATGGCAATGACTTCTGCTGGTTCATCAGAGCTGATTGCTGTGTCCTCATTATGCACATATGATATCTACCGTACTTACATAAATCCCAATGCAAGTGGGAAGGAAATCCTCAAAGTGTCAAGAGGGGTTGTCCTAGGCTTTGGTTGTTTCATGGNGTTGCTAGCAGTTATACTGAACAAGGCTGGAGTTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTCTAATTGGCTCAGCAGTTCTTCCTATTGCCTTTATGCTCCTATGGAGAAAAGCAAATGCAACTGGGGCCATTCTTGGAACAGTTTTTGGTTGTGTTCTAGGAATAATCACATGGTTGTCTGTTACAAGAATAGAGTATGGCCAGATAAACCTTGATACAACTGGCAGAAATGCACCAATGCTTGCTGGGAACCTTGTCTCAATACTAACTGGGGGAGCTGTTCATGCTATCTGCAGCATGTTGTGGCCTCAGAACTATGACTGGAGCACCACCAAGCAAATCACAGTGGTTGAAAAGGAAAAGACTGACCTGCCAGCTGAAGAGTTTAAGGAACAAAAGTTGACAAGAGCCAAAGCTTGGATAGTGAAGTGGGGTGTTGGCTTCACTGTTTTGATAGTTATACTTTGGCCTATTCTCTCCCTCCCAGCAGGGGAGTTTAGCAAAGGCTACTTCTATTTCTGGACAGTGATTTCCATAGGATGGGGTACTATTGGTTCTGCTGTGATAATTGTTTTACCACTAGTAGAGAGCTGGGAAACCATCCAAACTGTCACTCTGGGCATGATTACAAATGACAGGCTCATGGAAAAGGTGGAGGAGTTAAATTTCAAGCTGCACACAATCATGCAGGCAATACCAGAAGCTGAGAGACTTTACTTGATTGACAAGGGTTAGGCCAAAAAACTAGAAGCCTCAGACTCAGAGTAGCAACAATCTTGTTCACAAAAATCTTAATAGAGCAAATAAATTATTAGTCTGCTAAGCATGCCTCTACAGTTGGCTCTCTGATATAAGTTAACAATGTCAAAATAAGTTAACATTTTTGTACTTATTTGTGAAAACAAAAAACCCAAAAACAAATCAAAACACCTTGGATTTCTTTAAATTCCGATCCATAAGCCTCGAGTAATGCCCAGAAAAATACTAACAGAGTAGCCTTTATTTTCAGAAGTTATACCGACAACTCTTTTCAGAAAGAAAATGGAAATTCTTTTCTTTGTAATCTTCCATATCCCATCCTTGCTCACATTAAAACGCACCATCGCCTTGCAATTTGTTCTTGAATCTGCTCTTTCATACGCCACTTCACCTTCAGGTTCATTGTTCTTAAACCCTTGTTTGGAGCAATAAAATTCTTT

Protein Sequence

>Glyur000114s00010497.1
MASPSQCPPFEFSGKYGWRSGMLGPATPLNGSIQQVEVLRQGSLLVSLCLSWGTSAHIVFLFFCFLTNITVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHIVLVIFVYLVYTASSELGSPTVVYNRLLEVASKSRTCQDPISHHGQSCGPVSGNHKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINESEAGRGLVPPATAVALMGKGGSILLLTMLFMAMTSAGSSELIAVSSLCTYDIYRTYINPNASGKEILKVSRGVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAILGTVFGCVLGIITWLSVTRIEYGEINLDTTGRNAPMLAGNLVSVLTGGAVHAISSMLWPQNYDWSTTKQITVVEKEMTDLPAEEFKEQKLTRAKAWIVRWGEFSKGYFYFWAVISIGWGTLGSAVIIVLPIVESWETIQTVILGMXTNDRLMEKVEELNFKLHTIMQAIPEAERLYLLDKGKAKKLEASDSEQQQSCSLPFPTVVYNRLLEVASKSRTCQDPISHHGQSCGPVSGNHKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINESEAGRGLVPPATAVALMGKGGSILLLTMLFMAMTSAGSSELIAVSSLCTYDIYRTYINPNASGKEILKVSRGVVLGFGCFMXLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANATGAILGTVFGCVLGIITWLSVTRIEYGQINLDTTGRNAPMLAGNLVSILTGGAVHAICSMLWPQNYDWSTTKQITVVEKEKTDLPAEEFKEQKLTRAKAWIVKWGVGFTVLIVILWPILSLPAGEFSKGYFYFWTVISIGWGTIGSAVIIVLPLVESWETIQTVTLGMITNDRLMEKVEELNFKLHTIMQAIPEAERLYLIDKG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00114	274209	286900	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000114s00010497.1	PF00474.12	SSF	61	395	1.30E-14
Glyur000114s00010497.1	PF00474.12	SSF	670	840	4.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.369
SRR1783600	control	0.357
SRR1783602	moderate drought stress	0.247
SRR1811619	moderate drought stress	0.228

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.642
DRR006520	Root Summer glycyrrhizin high producing strain	0.628
DRR006521	Root Winter glycyrrhizin high producing strain	1.881
DRR006522	Root Winter glycyrrhizin high producing strain	1.892
DRR006523	Root Summer glycyrrhizin low producing strain	0.328
DRR006524	Root Summer glycyrrhizin low producing strain	0.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.282

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.227
SRR2868004	Drought Stress (root)	3.952
SRR2967015	Control (root)	4.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.923
SRR9715740	Leaf	23.747
SRR9715741	Leaf	16.242
SRR9715739	Root	0.932
SRR9715742	Root	1.446
SRR9715743	Root	1.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.622
SRR8749028	MeJA induced 9h	6.491
SRR8749029	MeJA induced 9h	6.913
SRR8749030	Uninduced	2.175
SRR8749031	Uninduced	2.777
SRR8749032	Uninduced	3.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.022
SRR8400027	Control - Root	4.502