Gene detail

Gene detail information of Glyur000114s00010493.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003611892.1	0	LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula]
COG	YP_004775215.1	6.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KAT7\|G7KAT7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES94850.1}

Sequence

Transcript Sequence

>Glyur000114s00010493.1
ATGGCATTGACATTAGGAAACCAGACCGATCATTTGGCATTGCTCAAATTCAAGGAATCAATATCTAGTGACCCCTATGGAATCCTGGATTCTTGGAATAGTTCAACCCACTTTTGCAACTGGCATGGAATCACATGTAGCCGCATGCATCAAAGAGTTGTAGAGTTGAACCTACAAGGATACCAGTTGCATGGATCCATATCTCCCCATGTTGGCAATCTCTCTTTTCTGAGAAACCTCAACCTTGGAAACAATAGATTCTTTGGAGAAATCCCACATGAATTGGGTCGGTTGTTACAATTGCAACAACTCTCTCTCACCAATAACTCGTTTGCAGGAGAAATTCCTACAAATGTGACAAATTGCTCCAATCTTAAGGACTTGCGCTTAGATGGGAACATTCTGATTGGCAAAATACCAGTTGAAATCGACTCCCTCCAAAAGCTTCAAGTAGTGCGCCTTTCGAAAAACAATTTAACTGGAGGAGTCCCACCAACCATAGGGAATCTCTCAACCTTGTCTGTTCTCGCGTTTTCTTATAACAAGTTAGAGGGAGATATTCCACAAGAAATATGTCACCTCCAAAACTTGACATGGATGGGATTTTTTGCAAACGAATTGTCTGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACTTTGATCTCAATAGCAGATAATGTCTTTGATGGCTCTCTTCCACCCAACATGTTTCATAACCTCCCAAATCTTCAAGTTTTTCAAATTGACATGAATCAATTCTCTGGTCCAATCCCCACTTCTGTTGCAAATGCTTCTTCCCTAACAGATATTGATATCAGTCAAAACCATTTTATCAGTCAAGTTCCAAGTCTAGGAAAGCTACAACATCTCTGGATGCTAAATTTGGAATTCAACAATTTAGGTGACAATTCAACCGAGGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGCAAACTGCGAGTGTTTTCTATAGCTGGAAATAATTTTGGAGGTAGTTTGCCAAATTTCATAGGCAATTTATCCACCCAACTTAGTGAACTATATATTGGGGGTAACCAAATATCAGGAAAAATTCCCACAGAATTAGGAAATCTAATTGACTTAACTCTCCTTGGGGTGGAACAAAACCACNTTGAAGGAATTATTCCAGCTAGTTTTGGAAAGTTTCAAAAGATGCAACTNTTGGCTATGAGTCAAAACAAACTGTCAGGAGATGTACCAGCCTACATAGGCAACCTCAGTCAATTGTTTCACCTGGATTTAGGACAAAATAAGTTAGAAGGGAATATTACTCCAAGNATAGGGAACTGCCAAAAGTTACAATACCTAAACCTTTCACACAACAATCTTAGAGGAATCATACCCTTAGAGGTTTTTACCCTTTCCTCTTTATCAACCTCATTGGACTTGTCAGAAAATTCATTGAGTGGTAGCTTACCAAAAGAAGTGGGTATGCTAAAAAATATCGATGTGCTAGATGTCTCTGAGAATCATCTGTCTGGTGACATTCCTGGAACCATTGGTGAATGCACAAGCTTAGAATACCTTCATTTGCAAGGGAACTCCTTCCACGGAATCATACCGTCCTCCTTGGCTTCTCTTAAAGGTCTCAAATATTTAGACTTGTCAAGAAATCAGTTGTATGGACCAATTCCTGGTGTTCTACAGAACATTTCTNTTTTAGAACACTTAAATGTTTCTTTTAACATGTTGGACGGCAAGGTACCGACAGAAGGTGTTTTTGGAAATGCAAGCNGGTTAGCNGTGACCGGAAACAATAAGCTTTGTGGAGGAATTTCAAAGCTGCATCTACCGCCATGCCCTGTCAAAGGTATGAAACCAACAAAACACCATAAATTCAGGTTGATAGTAGTGATTGTTAGTGTGGTTTCTTTTCTTCTCATATTGTCATCTATTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTGATTCACCAACAATTGACCAGCTAGCTAAGGTTTCATACCAAGACCTACATCATGGAACTGATGGGTTCTCAACTACAAACTTGATTGGATCAGGAAGTTTTGGTTTTGTGTACAAAGGAAATCTTGTGTCAGAAGATAAAGTTGTTGCCGTAAAGGTCTTGAACCTTCACAAGAAGGGAGCTCACAAGAGTTTCATTGCAGAATGTAATGCACTCAAAAATATTAAACATCGAAATCTGGTTAAGATTTTAACCTGTTGTTCCAGTATTGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAGGAAGTGTTGAGGAGCTTCCTAAAGCANNGAACCTTGATCAAAGGTTAAATATCATTATCGATGTTGCTTCAGCGCTACATTATCTGCATCATGAATGTGACCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTTCTTGACGATGACANGGTTGCTCATGTGAGTGATTTTGGCATTGCAAGACTTGTTTCAACCACTGACGGTACCTCTCAAAAGGAAACTAGCGGTAGTACAATTGGAATAAAAGNAACTGTTGGCTATGCTCCTCCAGAGTATGGGATGGGTTCTCAAGTGTCCACATATGGTGACATGTATAGCTTCGGGATGCTTATTTTGGAAATGCTTACCGGAAGAAGACCCACTGATGAAATGNTTGAAGATGGTCAAAATCTGCATAACTTTGTTGAAATTTCATTTCCAAATAATCTTATACAGATTTTGGACCCACATCTTGTTCCAAGAGATNAAGAAGCACCAACAGAAGATGTAATCAGTGAGAATCTTATTCCAACTATAGAGAAGTGCTTAGTTTCACTCTTGAGGATTGGACTTGNTTGTTCAGTGGAATCACCCAAAGAAAGAATAAATATAGTGGATGTCACTAGAGAGCTAAACACAATCAAAAAGGCATTNCTCGCTGGTGTTCACACTCGTGAGTAA

Protein Sequence

>Glyur000114s00010493.1
MALTLGNQTDHLALLKFKESISSDPYGILDSWNSSTHFCNWHGITCSRMHQRVVELNLQGYQLHGSISPHVGNLSFLRNLNLGNNRFFGEIPHELGRLLQLQQLSLTNNSFAGEIPTNVTNCSNLKDLRLDGNILIGKIPVEIDSLQKLQVVRLSKNNLTGGVPPTIGNLSTLSVLAFSYNKLEGDIPQEICHLQNLTWMGFFANELSGTFPSCLYNMSSLTLISIADNVFDGSLPPNMFHNLPNLQVFQIDMNQFSGPIPTSVANASSLTDIDISQNHFISQVPSLGKLQHLWMLNLEFNNLGDNSTEDLEFLKSLTNCSKLRVFSIAGNNFGGSLPNFIGNLSTQLSELYIGGNQISGKIPTELGNLIDLTLLGVEQNHXEGIIPASFGKFQKMQLLAMSQNKLSGDVPAYIGNLSQLFHLDLGQNKLEGNITPXIGNCQKLQYLNLSHNNLRGIIPLEVFTLSSLSTSLDLSENSLSGSLPKEVGMLKNIDVLDVSENHLSGDIPGTIGECTSLEYLHLQGNSFHGIIPSSLASLKGLKYLDLSRNQLYGPIPGVLQNISXLEHLNVSFNMLDGKVPTEGVFGNASXLAVTGNNKLCGGISKLHLPPCPVKGMKPTKHHKFRLIVVIVSVVSFLLILSSILTIYWMRKRNKKPSSDSPTIDQLAKVSYQDLHHGTDGFSTTNLIGSGSFGFVYKGNLVSEDKVVAVKVLNLHKKGAHKSFIAECNALKNIKHRNLVKILTCCSSIDYKGQEFKALVFEYMKNGSLEQWLHPRTGSVEELPKAXNLDQRLNIIIDVASALHYLHHECDQLVLHCDLKPSNVLLDDDXVAHVSDFGIARLVSTTDGTSQKETSGSTIGIKXTVGYAPPEYGMGSQVSTYGDMYSFGMLILEMLTGRRPTDEMXEDGQNLHNFVEISFPNNLIQILDPHLVPRDXEAPTEDVISENLIPTIEKCLVSLLRIGLXCSVESPKERINIVDVTRELNTIKKAXLAGVHTRE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00114	249183	252395	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000114s00010493.1	PF08263.7	LRRNT_2	8	47	2.80E-12
Glyur000114s00010493.1	PF00560.28	LRR_1	77	98	0.89
Glyur000114s00010493.1	PF00560.28	LRR_1	347	369	0.82
Glyur000114s00010493.1	PF12799.2	LRR_4	421	460	6.40E-07
Glyur000114s00010493.1	PF13855.1	LRR_8	515	575	2.90E-10
Glyur000114s00010493.1	PF00069.20	Pkinase	683	915	3.70E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.024
SRR1783600	control	0.047
SRR1783602	moderate drought stress	0.012
SRR1811619	moderate drought stress	0.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.035
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.018
DRR006524	Root Summer glycyrrhizin low producing strain	0.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.129

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.158
SRR2868004	Drought Stress (root)	0.169
SRR2967015	Control (root)	0.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.173
SRR9715740	Leaf	0.063
SRR9715741	Leaf	0.064
SRR9715739	Root	0.000
SRR9715742	Root	0.040
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.518
SRR8749028	MeJA induced 9h	0.924
SRR8749029	MeJA induced 9h	0.601
SRR8749030	Uninduced	1.690
SRR8749031	Uninduced	1.746
SRR8749032	Uninduced	1.204

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.035
SRR8400027	Control - Root	0.031