Gene detail information of Glyur000114s00010489 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22370.1 | 1.00E-80 | alternative oxidase 1A |
| NR | KHN42869.1 | 1.15E-99 | Alternative oxidase 1, mitochondrial [Glycine soja] |
| COG | YP_002262194.1 | 7.00E-58 | hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238] |
| Swissprot | tr|Q07185|AOX1_SOYBN | 3.00E-100 | Ubiquinol oxidase 1, mitochondrial (Precursor) |
| trEMBL | tr|I1JVV5|I1JVV5_SOYBN | 5.00E-100 | Ubiquinol oxidase {ECO:0000256|RuleBase:RU003779} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00114 | 235352 | 237167 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000114s00010489.1 | PF03055.10 | RPE65 | 3 | 74 | 7.30E-19 |
| Glyur000114s00010489.1 | PF01786.12 | AOX | 78 | 226 | 1.10E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.303 |
| SRR1783600 | control | 0.377 |
| SRR1783602 | moderate drought stress | 0.279 |
| SRR1811619 | moderate drought stress | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.909 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.815 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.296 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.727 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.420 |
| SRR2868004 | Drought Stress (root) | 5.691 |
| SRR2967015 | Control (root) | 2.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.978 |
| SRR9715740 | Leaf | 1.688 |
| SRR9715741 | Leaf | 1.863 |
| SRR9715739 | Root | 0.172 |
| SRR9715742 | Root | 3.156 |
| SRR9715743 | Root | 3.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.696 |
| SRR8749028 | MeJA induced 9h | 26.163 |
| SRR8749029 | MeJA induced 9h | 32.522 |
| SRR8749030 | Uninduced | 16.141 |
| SRR8749031 | Uninduced | 14.890 |
| SRR8749032 | Uninduced | 78.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.558 |
| SRR8400027 | Control - Root | 1.245 |