Gene detail information of Glyur000114s00010479 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31350.1 | 3.00E-77 | KAR-UP F-box 1 |
| NR | XP_004512365.1 | 0 | PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cicer arietinum] |
| Swissprot | tr|Q8GX29|SKI25_ARATH | 2.00E-121 | F-box/kelch-repeat protein SKIP25 |
| trEMBL | tr|G7K6R4|G7K6R4_MEDTR | 7.00E-177 | F-box/kelch-repeat protein SKIP25, putative {ECO:0000313|EMBL:AES95534.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00114 | 163893 | 165083 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.380 |
| SRR1783600 | control | 3.132 |
| SRR1783602 | moderate drought stress | 2.860 |
| SRR1811619 | moderate drought stress | 2.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.425 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.187 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.179 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.401 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.278 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.041 |
| SRR2868004 | Drought Stress (root) | 21.233 |
| SRR2967015 | Control (root) | 20.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.086 |
| SRR9715740 | Leaf | 9.567 |
| SRR9715741 | Leaf | 6.150 |
| SRR9715739 | Root | 7.865 |
| SRR9715742 | Root | 2.583 |
| SRR9715743 | Root | 3.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.103 |
| SRR8749028 | MeJA induced 9h | 0.566 |
| SRR8749029 | MeJA induced 9h | 0.449 |
| SRR8749030 | Uninduced | 3.881 |
| SRR8749031 | Uninduced | 0.448 |
| SRR8749032 | Uninduced | 0.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.466 |
| SRR8400027 | Control - Root | 12.476 |