Gene detail

Gene detail information of Glyur000114s00010477.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38250.1	3.00E-30	Homeodomain-like superfamily protein
NR	XP_003516496.1	3.39E-170	PREDICTED: trihelix transcription factor GT-3b-like [Glycine max]
Swissprot	tr\|O80450\|TGT3B_ARATH	8.00E-47	Trihelix transcription factor GT-3b
trEMBL	tr\|K7K3Z3\|K7K3Z3_SOYBN	1.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G35370.2}

Sequence

Transcript Sequence

>Glyur000114s00010477.1
CAAAAACAGCTCCGTGAGCGCCGNCATGACGCCGCACCCCGTACTCTAGCCGTCCGCCGTCGCATCGCTCTCTTCCTCGTCGCCGTCTGCCAAGCATNCATTGCGTATCAATCGGTCTTCCGTCTCCGTTCACCCACCTCTGCCGCATCTCGCGTTTGCCTCCTCTTGTGCCACCGTCTGTAAGCTCGACGCCTCTCCTACAGTCACGGTCATGGCCGCTGTGTGTTGTGGATGAGTGTTAACCCTAACGCACCAGAGAGGAGAGAGGAGAGAGGAGAGAGAGGGTGATGTGGAAAAAATGCTGATGTGTCAGCTGAGGTGTGCAAAGTGAGGTGCCACCTCAACAGGTCAACTCAGTCAGGGACTAAAACCAAACAAAAAATTATTATAGAGACTAAAAATGTTTAATTTTTTTTTTAGGGACCAAAATCAAAATACTCCTATATTACAGGGACCTGAAACATATTTAAACCTTAAAATTTCCTCTTACGCAGTTACGCCTACGCGTGAATTTATAACNTGAACTATTGCCATGTCCATAGTAGTAGTATACAGCCCATCCAAACACGGTGTAACTTTTTACACCGACAATCAANAACGGCATTAATTAAAACGCATTTTGAGACTTTCGTGCTAAGTGGATAGTCAACGATTCCTATCTTGTCGACAAAGAAAACTTTGGAAANCCGAAAGCACAGAAGAACAAAAAAAAATAGAGAGCCCTTTTTTGTGTGTCTCGAGGCTTCGAGTTTTAGGTGTAGCACTTGAAAAACCCTAATCCCGAAATCGCTCCGTTTCGTTTTGATCGATACGACGTCGTGGTGTGGCAGGAGGGGAATGTTCGGTGGTGGTGGAGGAGACGATGCCCTGGCTGCTCGACTCGGCATGGTGACGCCGTCGCTGCTGAATCCGGCGACGTCATCGATGATCTCCGGCNAGATATCTCCGGCGCCGGCGAGGGAGGAGAGGGGGCCGAGTCAGCCGCAGTGGAGCCAGCAGGAGACGAGGGAGTTCATAGCGATAAGGGCGGAGCTGGAGAGGGACTTCACCGCGTCGAAGAGGAACAAGACGCTTTGGGAGGTGGTGAGCTCCAAGATGAGGGAGAGAGGGTATAGGAGAAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAAACATCCGATCCAGAGCATGGCAGGCAATGCCCATTTTTTGAAGAATTGCATGCAGTCTTTACCCAAAGAGCACATAACATGCAACGTTTGCTTCTTGAATCTGAAACTCGTTCAGCTCAAACAAAGAAAGGGGTGAAAAGATTAAGTGGAGATCGATCCTCAGAGGAATTCTCAGNGGATGACGATGAGGCTGAAGATGACAGTGAAGAGGAGAGACCTGTTAGAAGCAATACCCNCAAAAGGAAAGCCAACAAAATTCCAATGGAGAAGTCTGCAAGGGCAAACAATGCATCTAATAGTACTAGTAGTATTCAGGAACTGCTCAAGGAATTTTTCCAGCACCAGCTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCACATGAAAGACAGCTGTTTGAGCAGGAGTGGCGGCAGTCNATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCAGAGAGGAGGGANGCTTTGTTGACGACCCTTTTAAACAAACTCATTCATGAACCTAACTAAACGAGGCAAATGGCTTGGATTTCTCGTGGCGAATTTCTTTGTTGTTTCCATTTAATATATGATTCTAAGTTTAGTCGAGAATGAACCAGATTTTATAGTAGAGCTTTTGATTNCAGAGAATTTTGGAAAGGAGTATTTGGTGAATGAAGGAAGGAGAGCATTCGAATTTTATAGGGGTATATGAACACTTTCTTTTGAAAGTTGATACAGANAGAGATTTTTAAATTGATTATTTTAGGGATACTTTTGTTTGGCATGGTCCATCCAGGGTATATTGCTGTAACTAAAAACAGATATGGATTTCAGTCTGTATGATTTTCTTATTTCTGTACATACATTATATATTTGCCTTTGAAAGATTCTTGCAAAGATTTCAAGTATGTTTACTAGCAGAAAAATCTTATCCATTTGTTCGTTCTATGGAATGATTTCGATGTGATTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00114	146988	150272	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003682 chromatin binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000114s00010477.1	PF13837.1	Myb_DNA-bind_4	49	132	2.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.490
SRR1783600	control	6.508
SRR1783602	moderate drought stress	5.640
SRR1811619	moderate drought stress	5.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.460
DRR006520	Root Summer glycyrrhizin high producing strain	15.077
DRR006521	Root Winter glycyrrhizin high producing strain	7.843
DRR006522	Root Winter glycyrrhizin high producing strain	7.496
DRR006523	Root Summer glycyrrhizin low producing strain	25.796
DRR006524	Root Summer glycyrrhizin low producing strain	26.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.350
SRR2868004	Drought Stress (root)	13.539
SRR2967015	Control (root)	13.702

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.893
SRR9715740	Leaf	10.837
SRR9715741	Leaf	12.331
SRR9715739	Root	2.368
SRR9715742	Root	14.869
SRR9715743	Root	11.868

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.714
SRR8749028	MeJA induced 9h	58.831
SRR8749029	MeJA induced 9h	74.119
SRR8749030	Uninduced	61.512
SRR8749031	Uninduced	61.183
SRR8749032	Uninduced	39.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.272
SRR8400027	Control - Root	15.068