Gene detail information of Glyur000114s00010472 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36620.1 | 3.00E-57 | ribosomal protein L24 |
| NR | KDP29235.1 | 1.48E-94 | hypothetical protein JCGZ_16624 [Jatropha curcas] |
| COG | YP_001435313.1 | 4.00E-08 | 50S ribosomal protein L24 [Ignicoccus hospitalis KIN4/I] |
| Swissprot | tr|O65743|RL24_CICAR | 8.00E-89 | 60S ribosomal protein L24 |
| trEMBL | tr|A0A067KAG6|A0A067KAG6_JATCU | 6.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:KDP29235.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00114 | 134819 | 136801 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000114s00010472.1 | PF01246.15 | Ribosomal_L24e | 3 | 73 | 4.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 118.581 |
| SRR1783600 | control | 119.019 |
| SRR1783602 | moderate drought stress | 95.096 |
| SRR1811619 | moderate drought stress | 93.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 232.709 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 229.755 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 178.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 172.975 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 188.553 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 188.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 122.690 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 122.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 404.154 |
| SRR2868004 | Drought Stress (root) | 247.668 |
| SRR2967015 | Control (root) | 268.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 170.317 |
| SRR9715740 | Leaf | 139.636 |
| SRR9715741 | Leaf | 136.851 |
| SRR9715739 | Root | 44.656 |
| SRR9715742 | Root | 95.261 |
| SRR9715743 | Root | 90.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 533.792 |
| SRR8749028 | MeJA induced 9h | 214.145 |
| SRR8749029 | MeJA induced 9h | 423.077 |
| SRR8749030 | Uninduced | 107.430 |
| SRR8749031 | Uninduced | 89.280 |
| SRR8749032 | Uninduced | 119.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 257.364 |
| SRR8400027 | Control - Root | 230.069 |