Gene detail

Gene detail information of Glyur000114s00010460

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45275.1	9.00E-152	Major facilitator superfamily protein
NR	XP_003612553.1	0	hypothetical protein MTR_5g026350 [Medicago truncatula]
trEMBL	tr\|G7K5G1\|G7K5G1_MEDTR	0	Nodulin-like/MFS transporter {ECO:0000313\|EMBL:AES95511.1}

Sequence

Transcript Sequence

>Glyur000114s00010460.1
CGATGTGTGAGGCCACGTAGAGGCACTCACACACCACACACCGACTAATATCAACCACCTTTCTTTGATCAAAAAAATATCAACCACCTTTCTTGACCTCGTTCGTTGGGAAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTAATAGAATAGAATAATAGTAATTGAATTGAGTAATGGCAGGGCAATCGCGGAAGTGGATGATATTGGTGGCGACGATATGGATACAGGCATTCACGGGAACCAACTTCGACTTCTCAGAGTACTCCTCCGCCATGAAGTCAGCACTCAACATCTCCCAGGTGCAACTCAACTACCTCGCCACCGCCAGCGACTTGGGCAAGGTCTTTGGTTGGTCCTCTGGCCTCGCCCTCATGTACCTTCCCCTCCCTCTCGTCATCTTCATTGCTTCCTCCATGGGTTTACTTGGCTATGGCCTCCAATGGCTCCTCCTCAACAACCTCATCACTCTCCCTTATTTCCTGGTGTTTCTTCTGTGTCTGTTGAGTGGCTGTAGCATCTGTTGGTTCAACACAATATGTTTTGTTCTCTGCATTAGGAATTTCCCAGTTAACAGGCCCCTTGCACTATCCCTCACTGTGAGTTTCAATGGTGTAAGTGCAGCACTCTACACGCTTGCTGCCAATTCAATAGACCCTTCATCCGATGCACTATACCTGCTTTTGAATGCCCTTGTTCCCCTCCTCACTTCCATTGTAGCACTACCCCCAATCCTTCGCCAACCACCTCTATTAGACTCTCCTTCTCCACATGCTGCTCGCAAGAACTCAGTCATATTCCTAATACTGAACATTTTAGCAGTTTTCACTGGCCTCTATCTCCTCCTCTTTGCCTCATCAACTTCTGATGAAGCCACTGCACGGCTCTACTTTGGTGGAGCTATTTTGCTTCTCGTGTTACCACTGTGTATTCCTGGCATTATATATGCTAGAGATTGGTTTTATCGCTCTGGCTTCATTCTTGTTCATGTTGATGATCTTGAGCTTCATAAAGAGCTGCTTACCCGTCAAAGCAGTCCTCTCAGCAATGGAGATGGTCATGGCCTGCTGGGTGAGAATGGTTTCGCGTATGGAAGTCAGAGGGCAAAGAGTAGTGATGTGATTTGTGGGAGGATTCTTGGGAAGGATCAGTTGGAAATGTTAGGAGAAGAGCACCCTGCTGCAGTGCTTGTCCAAAGGTTGGATTTTTGGCTCTATTATGTTGCATACTTCTGTGGAGGCACAATTGGTCTTGTCTACAGCAATAATCTTGGACAGATAGCTCAATCTTTAGGCCACAGTTCAAGAACCTCTACCCTTACTTTATTCGGAAATAGTGCTGTGGCACTCAACACAGGCACATCACTAATTGGTCTGAGCTCAGGTTTCATATTTGCGGCTGCGGTGGCAATTACATCCGAGCTGTTTGGACCAAACAATGTGAGCGTCAATCACAACATTCTCATAACAAACATCCCAATTGGGTCGCTTCTCTATGGTTTTCTCGCTGCGGTAGTCTATGATGCCAATGCTGCTAACTCAGCACCTGGAAACTTAATCTCTGGCCCGGGCTCATCACTGGTGTGCATGGGAAGGCAGTGCTACTTCTGGACATTTGTGTGGTGGGGTTGCATATCTGTCTTGGGACTAGCTTCTAGTTTGTTGCTATTCTTAAGAACTAAACATGCTTATGATCGTTTCGAGAGACACCGTATTTCAGCACAATCAGTTGTGTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00114	77090	81320	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000114s00010460.1	PF06813.8	Nodulin-like	7	253	5.00E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.444
SRR1783600	control	0.488
SRR1783602	moderate drought stress	0.111
SRR1811619	moderate drought stress	0.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.267
DRR006520	Root Summer glycyrrhizin high producing strain	0.307
DRR006521	Root Winter glycyrrhizin high producing strain	2.232
DRR006522	Root Winter glycyrrhizin high producing strain	2.232
DRR006523	Root Summer glycyrrhizin low producing strain	0.238
DRR006524	Root Summer glycyrrhizin low producing strain	0.189
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.832
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.204
SRR2868004	Drought Stress (root)	1.073
SRR2967015	Control (root)	0.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.450
SRR9715740	Leaf	14.840
SRR9715741	Leaf	7.972
SRR9715739	Root	0.103
SRR9715742	Root	0.178
SRR9715743	Root	0.144

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.663
SRR8749028	MeJA induced 9h	1.199
SRR8749029	MeJA induced 9h	0.828
SRR8749030	Uninduced	0.665
SRR8749031	Uninduced	0.413
SRR8749032	Uninduced	0.284

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.636
SRR8400027	Control - Root	0.453