Gene detail

Gene detail information of Glyur000113s00009465

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05320.1	3.00E-89	FAD/NAD(P)-binding oxidoreductase family protein
NR	KEH44375.1	0	FAD/NAD(P)-binding oxidoreductase family protein [Medicago truncatula]
COG	YP_005370688.1	3.00E-28	FAD-dependent oxidoreductase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|O81360\|ABA2_PRUAR	5.00E-13	Zeaxanthin epoxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A072W2C4\|A0A072W2C4_MEDTR	0	FAD/NAD(P)-binding oxidoreductase family protein {ECO:0000313\|EMBL:KEH44375.1}

Sequence

Transcript Sequence

>Glyur000113s00009465.1
ACAATTTTAGGGACTAACTTGACCGACGTTTTACAATTTCAGAGACTAAATTACATTTTCGTTAATTTCAGGGACTTAAGTGAGACAANTTTACAATTTCAAGGGCTAAAATGACAGTTATCTCTAAATAGTATATTTAATATACTCCTATAAAAAAAATAGGGAATAGGAGAGAGAAGGCAAATATATATACACTAGACGAATTGAGTCGATCGACTTTGAACAAGATATACTCAAGAGTAATTAATTTAGTGATGGAAACAAAATTAGTTGAAGAAGATATTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACAACTGCCTTAGGACTTCACAGGAATGTGACTACTTCATTGATTACGGGGCAACAAACCGCAGCTACATCTTTCAGGGACACAGGAAAGCCTGGAGCCCGTGAAGTTCGTTGTATTAGAAGGCAGTTATTGTTGGAAGCCCTTGCCAATGAGCTTCCAAATGGCACCATTAGGTGCTTGTCAAAGGTGGTTGCTATTGAGGAATCTGGCTTCTCTAAGATAGCCCATCTTGCTGATGGAACCACCATCAAAACTAAGGTATTGATTGGGTGTGATGGAATAAACTCCATGGTGGCAAAGTGGTTAGGCTTCAAGGAGGCCTCTTATACAGGGAGATATGCAATCAGGGGCTGTGCAGAGTTGAAAAGCAATCACAATTTTGAGCCAAAGCTCATGCAGTACTTTGGCAATGGTTTTCGTTCTGGAGCTATTCCATGTGATGATAAGGCTGTGTACTGGTTTTTCACTTGGATTCCCACCAACCAAGATAAAGAGCTAGTTGAGGACCCTGCTAAACTGAAACAATATGTGTTAAACAAGCTCGAGAAGATGCCAAGTAATGTTAGGTCCTTCAAAGAGAAAACTGGATTAGATGGTTTCCAATCAGCTCCATTGAGATATAGACATCCTTGGGAGCTAGTGATGGGAAACATTAGTAAAGGCAATGTTTGTGTTGCTGGAGATGCTTTCCACCCCATGACACCTGATCTTGGTCAAGGTGGATGCTGTGCCTTAGAGGATGGGATTGTTTTAGCCAGGTGCTTAGCTGGGGCCTTCTCCAAAAAACTAGGGACACATATCAAGGAAAAGGAATTAGAAGAGGACCAATACAAAAGGATTGAGGAAGGCTTGAGGAAATATGCAAATGAGAGAAGATGGAGATGCATTGATGTCATTAGTTTTATTCAGCAGGGTAATTCTAAGCTGGTTACCTTTTTGAGGGACAAATTTTTGGCTCCATTCCTAGCTAACATCGTGATCGTGGGAGCTGGAATTGCTGGGCTCACAACATCCTTAGGACTTTACAGGTTGGGGGTACGAAGTTTGGTATTAGAATCAGCAGATAGTTTAAGGGTCACAGGATTTGCATTAACAACATGGACAAATGCTTGGAAAGCCTTGGATGCTGTTGGCGTGGGAGCCATCCTTCGTCAGCAACATGTGCAGCTAAATGATGGAGCCTGTGAAGTTCGTTGTGTAAGAAGACAGTCAATGTTGGAAGCCCTTGNCAAGGAGCTTCCAAGTGGGGCCATCAGGTATTTGTCAAAAATTGNTGCTATTGAGGAATCTGGCTTCTCTAAGATACTCCATCTCGCTGATGGAACAACCATCAAANCCAAGGTATTGATTGGATGTGATGGAATAAACTCAGTGGTGGCAAAGTGGCTAGGCTTCAAGGAGACCTCTTTCACGGGGAGATATGTNATCAGGGGTTTCACAATGTTGACAGATAATCATCGTGGGCTTGACCCCAAATTCATGCATTTCTTTGGGAAAGGCTTTCGATCTGGTGTGCTTCCCTGTGATGACAGCACCGTTTACTGGTTTCTCACTTGGACTCCCACCACCCATGAGAGCACTAGAGTAGAAGATATTCTAACATCTCCATTGAGATATAGACACTTTTGGGAACTCATGTTGGGGAATATTAGTAAAGGCAATGTTTGTGTTGCTGGAGATGCCTTTCACCCAATGGCCCCTGACCTTGGCCAAGGAGGGTGTTGTGCCTTAGAGGATGGGGTTGTTTTGGCCAAGTGTCTGGCTGAGGTCTTCTCCTCCAAAAGACAAGCTGGCATGCATATTATCAAAGAAGATGATAAGGAGCAATACAAAAGGATTGAGNCTGGCTTGAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCAGTGTTACATCCTATATCCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	307510	325897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016117 carotenoid biosynthetic process

molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009465.1	PF01494.14	FAD_binding_3	101	277	9.80E-13
Glyur000113s00009465.1	PF05834.7	Lycopene_cycl	345	486	2.20E-07
Glyur000113s00009465.1	PF01494.14	FAD_binding_3	563	615	4.80E-07
Glyur000113s00009465.2	PF01494.14	FAD_binding_3	59	235	8.80E-13
Glyur000113s00009465.2	PF05834.7	Lycopene_cycl	303	444	1.90E-07
Glyur000113s00009465.2	PF01494.14	FAD_binding_3	521	573	4.40E-07
Glyur000113s00009465.3	PF01494.14	FAD_binding_3	98	277	9.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.563
SRR1783600	control	4.498
SRR1783602	moderate drought stress	11.500
SRR1811619	moderate drought stress	11.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.147
DRR006520	Root Summer glycyrrhizin high producing strain	11.120
DRR006521	Root Winter glycyrrhizin high producing strain	6.825
DRR006522	Root Winter glycyrrhizin high producing strain	6.597
DRR006523	Root Summer glycyrrhizin low producing strain	40.459
DRR006524	Root Summer glycyrrhizin low producing strain	41.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.873

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.449
SRR2868004	Drought Stress (root)	56.197
SRR2967015	Control (root)	36.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.904
SRR9715740	Leaf	0.942
SRR9715741	Leaf	1.415
SRR9715739	Root	2.161
SRR9715742	Root	3.067
SRR9715743	Root	3.261

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.138
SRR8749028	MeJA induced 9h	53.011
SRR8749029	MeJA induced 9h	35.796
SRR8749030	Uninduced	67.743
SRR8749031	Uninduced	99.906
SRR8749032	Uninduced	68.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.948
SRR8400027	Control - Root	6.302