Gene detail

Gene detail information of Glyur000113s00009464

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16940.2	1.00E-121	Splicing factor, CC1-like
NR	XP_007142808.1	0	hypothetical protein PHAVU_007G018500g [Phaseolus vulgaris]
COG	YP_503023.1	3.00E-10	RNA recognition motif-containing protein [Methanospirillum hungatei JF-1]
Swissprot	tr\|Q9FVQ1\|NUCL1_ARATH	5.00E-13	Nucleolin 1
trEMBL	tr\|V7BA94\|V7BA94_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14802.1}

Sequence

Transcript Sequence

>Glyur000113s00009464.1
ATGCTCGCCGGGATCTTGGACGGTGGGGTTGGACCTCCGTCAAGCACGGTGGGGGACGATGCGGTGATGGAAAGAGTTATGATGGACTTTGATGAATATGAATATCTAGAGAAAACAGTTGAAAATCATGAAATTAAGAAGGATAAGAAAACGGCTAATGGTAGGGACAGAACTGTGAAATCCGAAGAGAGAGGCCGTAGTCGGAGTTCTAAGCATAAGGATAGTGAGAAGGATGATGATGTTGATCACCATTCCAAGCATTCAAAATCTGGAGATGGTTCTCATGATTATGACAGGCATAAAGAAAGAGGCTCATCTCATCATCGCTCAAAGTCCGGAGATGGAGACAAGGGGAAGGATCAGCGCAGAAGCTCTGGGGGTAATAGGGATAGGGACATAGACAAGGAAGACAAGTACAGAAGGGAGAGAGACAAAGACTGGGACCTGGACCAAGAAAGAGACAGAAGGGATCGTGGCAGTGGGAGTGAAAGGGAGAAAGAGCACTCTAGGCGAAGCAGAAGTAGATCTGAAAGGAATCGTAGTGATTTGGATGACAGAGACAGAGAGACAAGTCGTGACAGGGACTATAGAGACAGAGAAAGAAGCCGAGATAAGGATTACAGAGACAGAGAAAGGGTGAGGAACTCAAGGGAACGAGATAGAGAAAGCAGATTCTGGGAACTCGCAGATATGGTAGAGCTATCATCAGATGGTCTTTCTGGCAATTGGGCCAGGCACTGGAACCTCAGACGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTTTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTACGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGTCAACCTCTTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTAGTGGACCCAGTGGACTTGCAGGCCCTTATTCTGGGGGTGGAAGAAGGCTGTATGTCGGCAATCTGCATTTCAGTATTACTGAAGCTGATCTTCGTGGGGTGTTTGAAGCGTTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTACCCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGTTGTTACTGATCAATCTGCAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGACGAGGGTGGTGGCTTGTCCCTGAATGCATGCTCCCGAACATTACTTATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTCGGAACCCTCGGTAATTCTGTTGTCAACAATACAGGCCTTAATCTACCAGCAATGGGAAACATACCAGCAGCAGCTCTTCTGGGAGCTACACCAGTGGATTCACTGGTTTCCCCCCTTTCTTCTGTTCCTGCAATAGCTGGATTGCCAGGTGGAGGTCTCCAAATTCCNACACCTGCAATTCCTTCCATTGATACAATCGGTGTTCCAAGTGAATGCTTATTGTTAAGGAATATGTTTGATCCCAAAGATGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGAAGTTAAATCATATATATGTTGATAAGTGNGTTAATTAGAGGAGTGCTGGTTTCGTCTACATACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCGNGCCTTACATGGGAGATGGTTTGCAGGGCAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATACGAGGAAAGATTCCCAGACAGCAGATAAATTCTTGGGGTCCATTATCAAGTATTCGCATGATTGTAGCAGGAATATGCATCCTCAGAATTATACCACTTAAGGCTTCCTTTGAGAAAGATTTTTAAGGAAGCCATGTTGTGTACACTTACACATGGAACTTCAATTTGTCTTCTGACTTATGAGAAGTTAAAAGGTGCTGCTTGTAAAAGCTGCAGNTGCTATACTTTATCTGTATTTTGGGGGGTGTTGGTTTGATTTAAGAATCTTATTACATTATTACTGTTGTACCTCTTAAGTGTTATTGACTGGGACATGGGTTTTGTGAATGCTAGTTACAATGATCATGTAATCCATCTTAGGCTGATGGCAATTACACAAGTTTTGATGTGCGATAATTGGACCGTGCTATCAATGTGCATGAAATACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	296701	306913	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006397 mRNA processing

cellular_component
GO:0005634 nucleus

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009464.1	PF00076.17	RRM_1	281	341	8.70E-10
Glyur000113s00009464.1	PF00076.17	RRM_1	377	446	1.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.160
SRR1783600	control	28.544
SRR1783602	moderate drought stress	37.638
SRR1811619	moderate drought stress	37.854

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.283
DRR006520	Root Summer glycyrrhizin high producing strain	51.191
DRR006521	Root Winter glycyrrhizin high producing strain	86.840
DRR006522	Root Winter glycyrrhizin high producing strain	84.845
DRR006523	Root Summer glycyrrhizin low producing strain	46.915
DRR006524	Root Summer glycyrrhizin low producing strain	47.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.814
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.679

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.346
SRR2868004	Drought Stress (root)	57.872
SRR2967015	Control (root)	64.908

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.464
SRR9715740	Leaf	23.648
SRR9715741	Leaf	25.938
SRR9715739	Root	5.052
SRR9715742	Root	25.174
SRR9715743	Root	21.754

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.705
SRR8749028	MeJA induced 9h	46.784
SRR8749029	MeJA induced 9h	26.328
SRR8749030	Uninduced	40.297
SRR8749031	Uninduced	22.543
SRR8749032	Uninduced	18.746

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.450
SRR8400027	Control - Root	58.891