Gene detail information of Glyur000113s00009460 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39350.1 | 1.00E-147 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KEH44350.1 | 0 | pentatricopeptide (PPR) repeat protein [Medicago truncatula] |
| Swissprot | tr|Q9FLZ9|PP405_ARATH | 4.00E-176 | Pentatricopeptide repeat-containing protein At5g39350 |
| trEMBL | tr|A0A072W297|A0A072W297_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH44350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00113 | 282944 | 285653 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000113s00009460.1 | PF13041.1 | PPR_2 | 101 | 148 | 5.80E-12 |
| Glyur000113s00009460.1 | PF13041.1 | PPR_2 | 202 | 248 | 2.20E-12 |
| Glyur000113s00009460.1 | PF13041.1 | PPR_2 | 302 | 349 | 2.80E-09 |
| Glyur000113s00009460.1 | PF13041.1 | PPR_2 | 405 | 450 | 3.30E-08 |
| Glyur000113s00009460.1 | PF13041.1 | PPR_2 | 531 | 561 | 5.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.359 |
| SRR1783600 | control | 3.557 |
| SRR1783602 | moderate drought stress | 5.355 |
| SRR1811619 | moderate drought stress | 5.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.654 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.600 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.374 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.604 |
| SRR2868004 | Drought Stress (root) | 3.628 |
| SRR2967015 | Control (root) | 3.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.969 |
| SRR9715740 | Leaf | 2.580 |
| SRR9715741 | Leaf | 2.287 |
| SRR9715739 | Root | 1.347 |
| SRR9715742 | Root | 3.635 |
| SRR9715743 | Root | 3.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.426 |
| SRR8749028 | MeJA induced 9h | 4.350 |
| SRR8749029 | MeJA induced 9h | 3.680 |
| SRR8749030 | Uninduced | 1.663 |
| SRR8749031 | Uninduced | 0.903 |
| SRR8749032 | Uninduced | 0.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.886 |
| SRR8400027 | Control - Root | 4.239 |