Gene detail

Gene detail information of Glyur000113s00009459

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G38520.2	Protein phosphatase 2C family protein
NR	XP_003536720.1	PREDICTED: probable protein phosphatase 2C 64-like [Glycine max]
Swissprot	tr\|Q5PNS9\|P2C64_ARATH	Probable protein phosphatase 2C 64
trEMBL	tr\|I1LF55\|I1LF55_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G42910.1}

Sequence

Transcript Sequence

>Glyur000113s00009459.1
GTTCACTGATCCCCTCTCTCTCTCTTCTCTCTCTCTCCCTCTCTCTAGTTCAATTCAACCTTGTTGTAGCAACTAGCAAGCATTGTGGTGTGGAGTGTGGGGCCCATAGCTGGACCTCTGCTTTGCTGGCTCCAAGCTCTCCNCATCGTTGGTCCTTTTATGAGGCTTGTCTTCTGCTGCCCAACTCAGAACAAAAGAAAGTGAAAAAAAAAAAAAACAAAATAGCCTTCATTTTTCTTTTCAATCTTTCTTTCATGCACCTCCCTTTTTTTCTTCTTCAACAATTTCACAATCTGCATACTCATACCATTTAACAACAAATCAGAGGAAAAGAAGAAGAAGAAGGAAAAATCCCACATCTGTTTCCTCTCTATTGTTTTGATGGATCCACGGATCTAATGATTTCACATGCTCTTCATTTAAGGATCATCATCATCTTCATCTGNGGCATCCAATAAATAGTCAAGTTGTTGACTTGGTGTTTGCGGTGGATCATCATCATCATTGAGGAGTTGTGCAGGACTGGTCTAATAGTGAATGAAAATTCTGGGGGGGTGTGAACTCGTTTCTGTGGTAAGTTGATAGATGTGGAAATCCTTGACGGTTGTTTAGTGAAATGAGGGATGTTATCGGAGTTGATAAACATTTTGAGGGCCTGCTTTCGGCCGGGTTCGGATGGATATGCACACACAAGCTCAGATTCTGGAGGTAGACAAGACGGACTATTGTGGTACAAAGACTCGGGGCAGCACNTGTATGGTGACTTTTCAATGGCTGTGATCCAAGCCAATAACTTGTTAGAGGATCAGAGCCAGATTGAATCAGGCAGTTTGAGCTCCAATGAGTCTGGCCCTTATGGAACCTTTGTTGGTGTCTATGATGGGCATGGAGGACCTGAGACATCACGCTTTATCAATAATCACCTATTTCACCATCTCAAGAGATTTACCTCAGAGCAACAATCNATTTCAGTGGATGTAATTCGCAAGGCATTCCAAGCAACGGAAGAGGGGTTTATGTCACTGGTATCCAGACAGTTTCTTATGTCACCGCAAATTGCAGCTGTTGGGTCATGCTGTCTTGTTGGTCTTATTTGTAACGGAACCCTTTATGTAGCAAATCTTGGTGATTCCAGGGCTGTTTTGGGAAGAGCAGTCAAGGCAACTGGTGAGGTTTTAGCCATGCAATTATCGACGGAGCACAATGCGTCGATAGAGTCTGTGAGGCAGGAGCTGCATTCTTTGCACCCTGATGATCCAAATGTTGTTGTATTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCTGAGTTCAATAGAGAACCATTATATGCTAAGTTTCGACTTCGCGAGCCAATCAAGAGGCCAATACTGAGCTCAGAACCATCAATATCAGTGCATCAGTTGCAGCCACATGATCAATTTATCATATTNGCGTCTGATGGGCTCTGGGAGCACCTTAGCAATCAAGAAGCNGTTGATATAGTTCAAAACAATCCTCGTTGCGGAATTGCAAGGAGGTTGGTGAAAGCTGCGCTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGATTTGAGGAAAATTGACCGTGGAGTTCGAAGGCATTTCCACGATGATATCACTGTGATTGTTGTGTATATTGACTCAAACCTCGTGAGTAGGGCAAGTACTGTCAANTTCCCTAGTAGTATTTCTGTAAGAGGGGGTGGGATTAACCTGGCTCATAACACACTTGCACCTTGTACCACACCAACTGAGATTGGTGGTACTTGATCTTGTCGAATTTAATTGGAAAATTTAGAATACCAAGAAAAATAATAATACTGTAAATTGCATCTCTTTTTCTTCTGAAGGCATAATACAAGTGTGCCCTTCAAAAACAGGATCTCTCTCTCTCTCTCTCTCTCTACAAGACCAAGGCTCTTATTCTGTAACTTTCACCAAGAGGGTATCAAGAAACGGATCTGGATTGAGGATTCCACATAATTTCTTTCCCCCCCAAAAAAAAAAAGAAACTTGTTGACACCGGAAATTTGGCGATACTAGCAAACCCATCTCTCCAATCTTCTCACTTTTCCCCACCCCAAATTCTTCCCTACCCGCCCGTGTTGTTCCAGCAAGAGGGGTGGTGTTTGAAGAACCATTCTTGGAGAAAGAAAACACGATTTGGTACCATTGAAGTGGCCTCTGTAGGCCAGAACCTCATCTCAGATATATTTCCTTAATTTATCTAAAATTTCTGCAAATGGGGGCGTGCTACATTTNTTGCTCTAGTTAGTGCAGACCTTCTGTATTTTCAAGTTTTGTTAATATAGGAGCAATATTAGGAAGATCTTTTGTTAACCAACAGCCAACAACTATTTTATGTCGTAGGTGTCNTTCCTACTGTTTCTATGCATAGGATGCATGGGTTATAAAAAGCTTGGAGATGGGAGTAATGGGAACTNAGGGGGTAAGGGGATGAACAGAGGTTGGTCTCCCCAATTTGGGGATTAGGTTTTTTTTCTTTATTCATTTGTTAAACAATTTATTTAATTGACTTTTGTTTTAAAAAAATCTGAGTCAGCATTCCACGTGGCAAAAAATGTCAAGTTGGTTGGCATGTTGATGTGGACTTCTGATTGTCACATCAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	269288	273828	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009459.1	PF00481.16	PP2C	76	323	1.00E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.516
SRR1783600	control	29.605
SRR1783602	moderate drought stress	28.348
SRR1811619	moderate drought stress	28.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.906
DRR006520	Root Summer glycyrrhizin high producing strain	16.957
DRR006521	Root Winter glycyrrhizin high producing strain	16.322
DRR006522	Root Winter glycyrrhizin high producing strain	15.920
DRR006523	Root Summer glycyrrhizin low producing strain	24.385
DRR006524	Root Summer glycyrrhizin low producing strain	24.683
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.673
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.537

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.189
SRR2868004	Drought Stress (root)	91.436
SRR2967015	Control (root)	57.404

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.750
SRR9715740	Leaf	15.745
SRR9715741	Leaf	12.364
SRR9715739	Root	25.663
SRR9715742	Root	25.296
SRR9715743	Root	26.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.038
SRR8749028	MeJA induced 9h	8.479
SRR8749029	MeJA induced 9h	9.666
SRR8749030	Uninduced	9.302
SRR8749031	Uninduced	9.847
SRR8749032	Uninduced	5.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.982
SRR8400027	Control - Root	50.092