Gene detail

Gene detail information of Glyur000113s00009457

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20920.1	2.00E-90	Protein of unknown function (DUF3353)
NR	XP_004497195.1	8.01E-162	PREDICTED: uncharacterized protein LOC101503512 [Cicer arietinum]
COG	YP_001867423.1	1.00E-23	hypothetical protein Npun_F4102 [Nostoc punctiforme PCC 73102]
trEMBL	tr\|I1NF87\|I1NF87_SOYBN	5.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G24080.1}

Sequence

Transcript Sequence

>Glyur000113s00009457.1
AGCTGTTGTTGTTGCTTTTGCTGGCAGGACTACTAGTTGCTATTTCTATTTCGATATTTATTTATTTGCCCGTTTTATTTTTTTGTTTGTTTTTTTTCTTCTTTGTCACTCACTCCAAGCCTCACGTTTCTCTGACAAAAAATGGCTGCCACTCTCCCCGTCCGGCCCGACCGTCTCTCCGCCGGCTCAGCCTTCCCCAGACCACCGGTTCGCCGACTCGACGCGCCCCCGCTCGGAAAACCGATTGTAACGGAGCCGTGGCGAGGCGCGGCGCTACAAATACAGTGCAGGCGTGCGTCAACGAGGAGCGTGGGGGCGGTTCAGGCCGGGTCGCGAGCCGATGACTCGGCGCCGTTCGAGATGTCGGTGGAGAACGCACTGAAGCTGTTAGGCGTGTCGGAAGGCGCTTCCTTCGACGACATACTCCGCGCCAAAAACTCCATCCTCGCCTCCTGCAACGGTGACCANGATATGATTGCGCAGGTTGAGGCTGCGTATGATATGTTACTTATGCAGAGCCTAACTCAGAGGCGGGCAGGAAAAGTGGTGAACAGTAGTGTTCGTTATGCTGATGTCAAGCGGGTTAAGCCCCCGGCAGCTATGGGATCTATGCCACAATGGTTACAGTCCAGAATGAAGAATTCACCTGTTTCAATTGAGTCTCCTTCCACCAGTGATTTTGGTTTACAAGCTGGAGTTTATGGTGCATTGATGGGTTTATCCTATATTAATGGTGCTTCTACACCCGTTGCAGCTTATGCCGGGGCTGATGTTCCTGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCCTGTACTTCATGACTAAGAAGAATGTTAAGTTAGGGAAGGCTACTGTCATAACCATAGGAGGGCTCATAGCTGGTGCTGTTGTAGGGTCAGCTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTGGGCATACACTCCCCTGCTGCTGTTGTTAGTGAAGTCATAATTATCTCTCAATTCTTGGTTTCTCTGTACCTAAGGGAAGGCTACTGTTATAACCATATAGGAGGGCTCATAGCTGGCCCTGTGGTAGGGTCAGCTGTAGAGAACTGGTTGCAGGTAGAAATTGACCCATTTATGGGCATACGCTTTCCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	258392	261205	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009457.1	PF11833.3	DUF3353	86	291	3.50E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.756
SRR1783600	control	9.644
SRR1783602	moderate drought stress	10.132
SRR1811619	moderate drought stress	10.252

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.353
DRR006520	Root Summer glycyrrhizin high producing strain	13.138
DRR006521	Root Winter glycyrrhizin high producing strain	10.684
DRR006522	Root Winter glycyrrhizin high producing strain	10.118
DRR006523	Root Summer glycyrrhizin low producing strain	16.111
DRR006524	Root Summer glycyrrhizin low producing strain	15.598
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.849
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.085
SRR2868004	Drought Stress (root)	31.214
SRR2967015	Control (root)	33.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	86.332
SRR9715740	Leaf	115.893
SRR9715741	Leaf	84.009
SRR9715739	Root	57.396
SRR9715742	Root	24.914
SRR9715743	Root	28.492

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.988
SRR8749028	MeJA induced 9h	12.882
SRR8749029	MeJA induced 9h	13.120
SRR8749030	Uninduced	6.823
SRR8749031	Uninduced	3.157
SRR8749032	Uninduced	12.298

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.410
SRR8400027	Control - Root	34.519