Gene detail

Gene detail information of Glyur000113s00009452

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26020.2	8.00E-88	Protein phosphatase 2A regulatory B subunit family protein
NR	KEH44392.1	0	protein phosphatase 2A regulatory B subunit family protein [Medicago truncatula]
Swissprot	tr\|O04375\|2A5A_ARATH	8.00E-105	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform
trEMBL	tr\|A0A072VRL4\|A0A072VRL4_MEDTR	0	Protein phosphatase 2A regulatory B subunit family protein {ECO:0000313\|EMBL:KEH44392.1}

Sequence

Transcript Sequence

>Glyur000113s00009452.1
ATGGGTAGCCAAAAAATCACAGCATCAACAAGCAGCAGCAGCCCAATAAAAACCCTTCATGACTTTTTTGTGCAGGAAAAGCCTCACTTCCCCATGATNCTCCCATCTTCTCCTTCTTCAGGAAGTGAAGAACTCCTCTCTACTATTTCCTACTGCACCTTTGTTTTCACCTTCAATGACCCTTCAGAATCTCCTGCACAGAGAGATTCCAAGAGGCTCCAACTCTCGCGGCTCATCGCGATGCTCAAGTCCTCAAAGAAGCCNGTGCCTGATACAGTTTTAGGACCTCTCGTAGCAATGATCTCAGCCAATCTCTTCAGGCCACTCCCTCCACCTTCCAACCCTTCAACCATCTCTGACTTGCTTGATGAAGAAGACCCCATCTCAATATTCTTACCCTTATGGTCACATCTCCAAATAGTTTATGAAATCCTTCTCAGGCTTGTTAACACCACAGACCCAAAAGTACTAAGAGAGTACATAGATCACCCTTTCCTCCTCAATCTCCTGCAACTTTTCCAGTCTGAAGATCNGAGGGAACGCGATAGTCTGAAGAATGTGTACCACAAGATGTATTCCAAGTTTGTTTCTGATCGTTCTGTGATGAGGAAATCAATGACTGATGTGCTGTTGAACTATGTGTTTGAGACAGAGAAGCATCCTGGTATTGCTGAGTTGCTTGAGATATGGGGAACCATAATCAATGGCTTTACCGTGCCACTCAAGGAAGAGCACAAGCTGTTCCTCATGAGAGTGCTGATTCCTCTGCACAAGACCAAGGGGGTGCAGGTGTACCATAGGCAACTGGCTTATTGCATACAACAGTTTGTGCAGAAGGAGCCTATGCTTGGGGGAGTTGTTGTTAGAGGGATTTTGAGATATTGGCCTGTCACTAACTGTCAAAAGGAAATCTTGCTAATTGGGGAGTTGGAAGATCTGGTAGCCGAGCGTGCACTCTATGTATGGAACAATGAGCAGTTCTACAAAATGGCAACAACAGGAACGGTAGAAGTATTTCCTGTCATAGTGGAAGGTGTGGAAAAGAACCTCAAGTGGCATTGGAGCAATAGCGTTAGGCAACTAACACAAAGTGTGAAGGTGATGGTGGAAGATATAGATCCAGATCTATATGCCAAGGTTCTCATGGACATGGAAGCTAAAGAATCAGTGGCACATCAACAAGATGTGAAGAGAAAAATGAGATGGGAAAGAATAGAATTGGCAGCTTCTAAGAATCACTTTGTCACTCCACAACATTATATATGTGTGTCCCACTNAACATTAATGTATCCAAATTTGTGCTGGCAATCCAACCTTCCTTAAATACAACAACAATCATTGCGTGGTAATGATTGTTTGAAAGTTGCTTAGTTGTTGACAGTGACAAATATCAACANCTCCTCAAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	223655	225629	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0000159 protein phosphatase type 2A complex

molecular_function

GO:0005488 binding

GO:0008601 protein phosphatase type 2A regulator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009452.1	PF01603.15	B56	37	313	2.70E-92
Glyur000113s00009452.1	PF01603.15	B56	314	409	3.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.429
SRR1783600	control	1.652
SRR1783602	moderate drought stress	1.401
SRR1811619	moderate drought stress	1.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.269
DRR006520	Root Summer glycyrrhizin high producing strain	1.384
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.485
DRR006524	Root Summer glycyrrhizin low producing strain	0.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.866

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.267
SRR2868004	Drought Stress (root)	16.460
SRR2967015	Control (root)	10.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.328
SRR9715740	Leaf	0.045
SRR9715741	Leaf	0.093
SRR9715739	Root	0.035
SRR9715742	Root	0.261
SRR9715743	Root	0.238

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.277
SRR8749028	MeJA induced 9h	0.016
SRR8749029	MeJA induced 9h	0.172
SRR8749030	Uninduced	0.045
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.101

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.465
SRR8400027	Control - Root	8.312