Gene detail

Gene detail information of Glyur000113s00009442

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16980.2	2.00E-70	Major facilitator superfamily protein
NR	XP_004497200.1	0	PREDICTED: hippocampus abundant transcript 1 protein-like [Cicer arietinum]
COG	YP_001370227.1	1.00E-15	major facilitator superfamily transporter [Ochrobactrum anthropi ATCC 49188]
trEMBL	tr\|A0A072VSM4\|A0A072VSM4_MEDTR	0	MFS transporter {ECO:0000313\|EMBL:KEH44398.1}

Sequence

Transcript Sequence

>Glyur000113s00009442.1
TGAATGAATGGCCATACATACTGTTTGATACTCAACCCGATTGAACCTTTATTCGGTCAAGGTTGTTGCCATGATATTGGCATATAGCAGGGATACCAAATTCTTCTACGCGTACTATGTGGTGAAAACTCTTGCTGCCATTGCAGGCGAAGGCAGCTTCCACTGCTTAGCTCTTGCATATGTGGCAGACACGGTTCCAGTGGGGAAACGAGCATCAGCATTCGGAATACTTGCTGGTGTCGGATCAGCATCATTCGTTGGTGGAACATTGGCTGCTCGTTTCCTATCCACTGCTTTGACATTTCAGGTTGCTTCAGTCTTCACAATGATTGCGTTGGTGTACATGAGAATTTTTCTCAAGGAAAGTGTGCGCATGAGGCAGCCATTATTGAAAGAGGGCGAGGAGGAACCATGCATTGAACAGGGTGAAGATGATTCATCATCAGCGAGGACATTTAAGAAACTGCCTTCGTTGGGGGATTTAATTTGTTTGCTCAAGTGTAGCCCCACATTCTCACAAGCAACAGCTGTTTTGCTCTTCAATAGTCTTGCAGATGGTGGCTTGATGGCTATATTGCTGTATTATTTGAAGGCACGTTTTCAATACAACAAGAACCAGTTTGCTGATTTGATGATGATTACGGGGATTGGAGCTACTCTTTCACAACTATTTTTCATGCCCATATTAGTACCTGCTATAGGAGAGGAGAAGTTGCTCACAACAGGGCTTTTAGTCAGCTGCATAAATATTTTNATCTACAGCATATCGTGGGCATCATGGGTTCCATATGCTCTGGCTGGTTGCTCTATTTTTGGAGTTTTTGTGCGACCAACTGGAATGGTTCAAGGATGTCTCTCAGGAATTACTTCCATCGCCAACATCATTTCTCCNTTAATTTTCAGTCCACTGACAGCCTTATTCCTATCGGAACAAGCACCATTTAATTTTCCTGGCTTCAGCCTACTGTGCCTTGGGCTAATACTGATGGTAGCATTTTTCCTAAGCCTAATGATTCGTGCTGTTCCTCCTATTGCTGGTGGCAAAACAAGTAGTAACCGCTGCACAGAAACCTTGGTCTGAGGTTGGGGTTTAGACTACTTGCTATTTGTGGGCACAACAAAGCAACAAACATTATCTTATCATCATCACGCTTCATTTTGCCTCAGCAAAATTGTTGTATATATAACCTATCAGCCGATAAGATAGCAAAATAATTAGAGGGAACCGTAAAGTATAGATTTTTAGGACAACATGTATGCTTTGGCACATGCATGTGGACCAACAACACTCGATGGCCAATTACAGAAAATGGAACGCGNAGTTTGCATATATTAAAACACAGACTTCGTTGCAATTATGAAGAGGAGATGTGGTGCGTATTTATGAGCCATAGGATCTGAGATCAGTTGCTTCTGAAGCCTTTGAAACTTTGCAATGTTAATTCTTGTATTATATGCATAGATTTATGTTGGCATATTAGTAGCTGTTAGTATAGTTTATCACGGGTTTCCTCTGGCTAGCAGGGCCCAGTGTCATGTTTGTGGAGACATTAGTCAAGGACTTTGTAATTCTTGTATTGAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	173381	177776	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009442.1	PF07690.11	MFS_1	9	255	1.90E-11
Glyur000113s00009442.2	PF07690.11	MFS_1	4	258	9.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.096
SRR1783600	control	24.158
SRR1783602	moderate drought stress	22.803
SRR1811619	moderate drought stress	23.002

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.588
DRR006520	Root Summer glycyrrhizin high producing strain	68.535
DRR006521	Root Winter glycyrrhizin high producing strain	20.659
DRR006522	Root Winter glycyrrhizin high producing strain	20.563
DRR006523	Root Summer glycyrrhizin low producing strain	110.620
DRR006524	Root Summer glycyrrhizin low producing strain	111.131
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.809
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.317

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.640
SRR2868004	Drought Stress (root)	12.719
SRR2967015	Control (root)	13.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.450
SRR9715740	Leaf	12.553
SRR9715741	Leaf	10.068
SRR9715739	Root	16.888
SRR9715742	Root	29.664
SRR9715743	Root	26.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.146
SRR8749028	MeJA induced 9h	0.271
SRR8749029	MeJA induced 9h	1.317
SRR8749030	Uninduced	1.712
SRR8749031	Uninduced	0.361
SRR8749032	Uninduced	0.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.170
SRR8400027	Control - Root	16.539