Gene detail information of Glyur000113s00009441 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27280.1 | 1.00E-46 | Zim17-type zinc finger protein |
| NR | XP_004497201.1 | 1.83E-112 | PREDICTED: uncharacterized protein LOC101505438 [Cicer arietinum] |
| trEMBL | tr|V7BD15|V7BD15_PHAVU | 4.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:ESW14788.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00113 | 166398 | 168867 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000113s00009441.1 | PF05180.7 | zf-DNL | 139 | 198 | 8.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.720 |
| SRR1783600 | control | 57.597 |
| SRR1783602 | moderate drought stress | 57.319 |
| SRR1811619 | moderate drought stress | 57.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 88.129 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 86.883 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 128.737 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 125.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 107.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 107.854 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 249.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 248.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.796 |
| SRR2868004 | Drought Stress (root) | 37.911 |
| SRR2967015 | Control (root) | 41.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 96.393 |
| SRR9715740 | Leaf | 158.081 |
| SRR9715741 | Leaf | 137.929 |
| SRR9715739 | Root | 34.866 |
| SRR9715742 | Root | 31.712 |
| SRR9715743 | Root | 27.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.569 |
| SRR8749028 | MeJA induced 9h | 36.876 |
| SRR8749029 | MeJA induced 9h | 34.969 |
| SRR8749030 | Uninduced | 25.512 |
| SRR8749031 | Uninduced | 30.246 |
| SRR8749032 | Uninduced | 35.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.994 |
| SRR8400027 | Control - Root | 38.603 |