Gene detail

Gene detail information of Glyur000113s00009437

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78610.1	0	mechanosensitive channel of small conductance-like 6
NR	XP_004497211.1	0	PREDICTED: mechanosensitive ion channel protein 6-like isoform X1 [Cicer arietinum]
COG	YP_004151825.1	3.00E-10	MscS Mechanosensitive ion channel [Thermovibrio ammonificans HB-1]
Swissprot	tr\|F4IME2\|MSL8_ARATH	0	Mechanosensitive ion channel protein 8
trEMBL	tr\|G7IDC2\|G7IDC2_MEDTR	0	Mechanosensitive ion channel family protein {ECO:0000313\|EMBL:AES62928.1}

Sequence

Transcript Sequence

>Glyur000113s00009437.1
ACCCACTCGACCGCAGGCAGTAGCATAGCATGAGAAGGATACGCGGTTGTTCCAGAAGGACCACCGCATTTACAATTACAATATCAGAAACCAAGCCCAACACCAACACTAANACTAGCACATCCTCCTCACACTAATGCGGTCTAACTCTCTCTGCAATCAATCAATTATAAAAACAACAACATCATCATTATTATTATTCTTTCTCATCAACATCTTCATCGCAAAGAGCATTTTTGCATCCACTGTACACGCGTCCGCTCATTGTCCGAGAAAAGACCCTTTCAATCCCAAAATTCTCATAACTCAAAAAGCAAATTTATATAATTGTATTTTTTTCAAAAAAAAATTTCTTGGTCACCAAACACCTACCTTTCCTCCTACCCCACTTTCTCACTCGAGTTTATTNTAATTTTTTTACTATTTTATTTTTACATTACAATCTTTAATAATCCCTACCCCTGATGCAATCTATCAGGAAATCCTTCAAATCTCATGNTTCATACAACAAACATTCCAGAAGGTTTTCCGCTTCAGGGAACCCAGATTCCGACCACGAGCAACTCCCAATCCTCCTCNATCAAGAAACCCCACACCACCACCAGAGCAGCCACTCCTACCCTATGGCCGGAGACGTCGTCGTCAAGATCGACGACGGCGGAGGCGGCGGCGGAGAACCCTCCTCCGCCCAGGGTGGCAACAAGATTTGGAGGGAATCCAGCTACGATTTCTGGCAGGACGCCGACAATGCACACGAGGAGAGCTTNGATTTCCGGCAGAAGGGCCAGTCGCCGGAGGACCCTCCGTCTCAGCTAATCGGGAGGTTCCTCCACNAGCAAAAGGCCTCCGGCGAGATGTCTCTTGACATGGATTTGGAAATGGAGGAACTCCAGCACGACGCCGTCGGCGACGGGAAGCTCCCTCCGGTGGAGGAGTCTCCGACCGTAATGCAAATGCAACGCGAGCTCAAGGTCTCGTTCGAGGAACCCTCCTCCAATGCGATGGAAGTCACCAACGATCCCGTCCGAAGAAGGCACAGCAAGGACTCCCCATCGCTATCGGAGTTCCAGAGGCCTCCCCAGCCGCCGCACCACGACCGCCGCCCGTCCCCTTCTCCCGCCGGACACGGAGGCGGCGACGGCGAGGTCCTGAGGTGCACCTCAAACGCCTCCTTCGAGAGAACCCTCTCTATGCAGAGGAAATCCGCGTTGCTGAAGACAAAAACCCGGTCCAGGTTAATGGACCCGCCCGAGGAANCCGACAGGAGATCGGGTCGGGTTATGAGATCGGGTCAGCTCCTTTCCGGGTTTCTGGGAAAGAAGAGCGAGGACGACGAAGACGACCCGTTTTTAGAAGACGATATACCCGACGAGTACAAGAAGACCCATTTCAGCTTGTGGATTTTGTTGGAGTGGATGAGCTTGATTCTCATCATCGGTGCATTAATAACCACGCTGTGTGTTCCTATTTTGAGGGACAAGAATCTTTGGCAGCTCAAGCTGTGGAAATGGGAGGTCATGATTCTGGTCCTGATATGTGGTCGTTTAGTCTCCGATTGGGTCATTCGAATAGCAGTTTTTTGCATTGAGAGGAATTTTCTACTGAGAAAGAGGGTGCTCTATTTCGTATACGGCGTGAGGAAGCCGGTGCAGAACTGTGTCTGGTTGGGCCTCGTTCTAATCGCGTGGCACTTATTATTTGACAAGAGAGTTCAGAGGGAGACCAGGAGTGATTTTTTACAATATGTCACCAAGGTTTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGCTATTGAAGACGCTCGCGGTTAAGGTTCTTGCTTCTTCATTCCACGTCAGCACATACTTTGATAGGATTCAGGAGTCACTGTTTAACCAGTTTGTGATTGAAACCCTTTCTGGGCCACCTCTTGTGGAGCTTCAAAGGGCTGAAGAGGAGGAAGAGAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAGTGCTGGGGTTACTATACCACCTGATCTTAGAGCAACAGCGTTCCCTAACGTTAAGAGTGGGAGGTTGAAGAGTGGGATGCTACAGAAGAGTCCCAGGGTGAAGAGTGGGAAATTCTCAAGGCCACTTTCTAAGAAGTCTGATGATGGGAATGGGATAAGTATTGATCATTTGCATAAGCTGAATCCTAATAATGTCTCTGCATGGAATATGAAGAGGTTGATGAACATGGTCCGGCATGGGGCTCTTACCACTTTGGATGAGCAGATTCTTGATTCCTCTAATGATGATGAGAATGCCACGCAGATTAGAAGTGAAAATGAGGCCAAAGCAGCTGCCAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGGTGCAGGTATATATACCCAGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTGCAAAGACCTTAAATCTCTTTGAAGGAGCAACTGATTCTGGGAAAATCAGCAAATCCGCCTTGAAGAACTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGATACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTGGTTGCCATCATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTCCTTCTTTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTTGTATTTGGAAACACCTGCAAGACCGTATTCGAAGCAATCGTATTCTTGTTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGAATCCAGATGGTTGTAGAAGAAATGAACATATTGACAACTGTATTTCTGAGATATGATAATCAAAAGATTATGATCCCAAACAGTGTCCTTGCCACTAAGGCCATACACAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCTGTATACATATAGCTACCCCAGTTGAAAAGATTTCACTCATGAAACACAGAATACAGAGTTACATTGACAACAAGAAGGAACACTGGTATCCTCAGCCTTTCATAGTGTTGAAGGACCATGAACATTTGAACATGGTGAGAGTGGCAATCTGGCCAACCCATAGAATGAACTTCCAAGACATGGGAGAAAGATATGTCAGGAGATCCATCCTGCTTGAAGAGTTGATGAGGATTTTCAGGGATATCGATATCCAATACCGACTCCTGCCACTTGACATCAACGTTAGAGCTTTGCCGACGACTTCGGAGCGGATCCCANCTAGTTGGACAACAACCACAGGCTGAGTACAAGGAAAGGAATCCCATGTAATCAGTAAGCCCCATGTTCTGCTATGAAGTGTGTTACTTTCTGGCAGGGTACGTAGGATTTATGTAAAGTAAAGAGAGTTTCTTAATTTTGGTTACTATTTGTAGATTAGTTTGGTGTCTACTAAAGATTAGTTAGTCTAGCTGATAAATCAGAGCCTCTTGGTACATGCCTTTTATCATGCAGTTTTGTTTCAAATATGATTAGTCGCTACCTCGTATATCTACCACCATATTGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	130019	134866	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009437.1	PF00924.13	MS_channel	698	867	8.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.177
SRR1783600	control	16.271
SRR1783602	moderate drought stress	8.555
SRR1811619	moderate drought stress	8.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.680
DRR006520	Root Summer glycyrrhizin high producing strain	4.546
DRR006521	Root Winter glycyrrhizin high producing strain	3.551
DRR006522	Root Winter glycyrrhizin high producing strain	3.461
DRR006523	Root Summer glycyrrhizin low producing strain	14.626
DRR006524	Root Summer glycyrrhizin low producing strain	14.914
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.873
SRR2868004	Drought Stress (root)	10.443
SRR2967015	Control (root)	11.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.386
SRR9715740	Leaf	14.244
SRR9715741	Leaf	10.840
SRR9715739	Root	10.626
SRR9715742	Root	18.915
SRR9715743	Root	17.118

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.535
SRR8749028	MeJA induced 9h	74.365
SRR8749029	MeJA induced 9h	89.140
SRR8749030	Uninduced	65.631
SRR8749031	Uninduced	19.682
SRR8749032	Uninduced	54.468

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.723
SRR8400027	Control - Root	20.312