Gene detail

Gene detail information of Glyur000113s00009431.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07610.1	5.00E-127	Transcription factor jumonji (jmjC) domain-containing protein
NR	XP_004497219.1	0	PREDICTED: uncharacterized protein LOC101510800 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	3.00E-149	Lysine-specific demethylase JMJ25
trEMBL	tr\|G7IE70\|G7IE70_MEDTR	0	Transcription factor jumonji (JmjC) domain protein {ECO:0000313\|EMBL:AES62955.2}

Sequence

Transcript Sequence

>Glyur000113s00009431.1
ATGGTGGAGAACCACACAGTAACAGGAGAAACACAAACCGTGGATGGAGGCGCCATAGCGGTGAAATCCGAGGAGTTGTTTTATGATGAAGGTTCTGTTAAAGGTGATGACGTGGCTGGAGGAGCAGGAGTTCCTACTTCTTCTGCTTCTCANGCTGTTGTTGTTGTTGAGCGAAAGAGGCGTGGCAGGAAGACTAATGAGGAGAGGGAGAAGAAGAAGAAGAAGGAGGAGGAAGAGGCATGGAAGAACATGTTAGATGGAGCAAATGTGTTGGCTAAAGGCTTTTCTCCTGTTCAAGTTCCTGCGCCGAAAAGGACGAGACGCGAAAGAAAGAGTGAAGCGGAGAAGAAGAAGAAGGAGGAGGAGGAGGAAGCCTTGAAGAACATTCTAGATGGATCAGATGAGTTGGGTAACGGTTCTTCTTCTGCTGCTCAAGTTGTTGTTGTAGAGCAAAAGAAGAAACGTGGCAGGAAGAGTGATGCGGAGAGGGCGGAGAAGCAGCAGGAGGCGTTGAAGAACATGTTAGATGGAGCAAATGAGCTTAGTAAGGGTTCTTCTTCTGTTCAAGTTCCTTTGAAAAGAAAGAGACGCCGTGGCAAGAAGCGCGGCAGGAAGAGTGAAGCGGANAAGAAGAAGGAGGAGGAGGAGGCCTTGAAGAGCATGTTAGATTTATCAGAGGGGAATTTGGTGGACAAGGAAGGTGCACAAGTGGAAAATGGTGGGGCCACCAAGAACAAGAAGAGACCTGGTAGAAAAAGAAATGCGATCCCTAGTGTTGAAGAAAATGGGTTGGAGGCCAAGAAAGATAAAGAACCGGTCAGTGGAATCAGGAGAAGTTTAAGGCCTAGAAATAAAGAAGCAGTGCTAGTTAGTCATAATAATAATAAAAAAAGTAAAGAGGAGATGCTAAAAGACAAAGAGAGACATGCTAAGGTGACACGACACCATCCCTCTGCTTATTTATCATTCTTAGGTTACATAAGTTGGATTGAAGAGGAGTCCTTAATGTGCCATCAGTGTCAGAGAAATGATAAGGGCAGGGTTGTGAGGTGCAGAAACTGTAAGCGGAAAAGATATTGCATACACTGTATAAGGAATTGGTATCCTCGATGGGAAGAGGATGATTTTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCTCGTGCACTTATCAATGATATGAAGAAAAACGCAAAAACCAATAAAGATAATGGGGTTGAACATTCTAAGTATNTGCTGAAAGGACTTCTTCCGTATTTAAGACAGTTGGATGAAGAACAAATGATTGAGAGGGAGATAGAAGCAAAGATCCAAGGGATATCACTCTCAGATGTAAAAATAAAAAAGGCAGATTATGAGAAAGATGAGCGTGTTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACAAATTGCTCTTTTGACATTTGTCTCATCTGTTGCCGTGAGCTTCGTGCTGGGCAGCTTCTAGGTGGTGCAGACCCAATTGAGTGGGAGATTGTCTGCCGTGGTCGTGATTATCTGCATGGTATAGAAGATGATAAGAAACGGGTAAAAGGAAATGTATCCCATGCTGATGGTGAGCCTGCACNTGAGCCTGAGACTCATGGATGGTCAAGATCTGGGTGGCATGCAGTTAGTGATGGCAACATTCCTTGTCCAAAAGCCAGTAGTGAATGTGACCATGGTTTTCTTGAACTGAGAAGCATACATCCTCCAAATCTCATCTCTGAGTTAGTATGTAAAGCAGAAGAACTAGCAGAAGCATATAAACTTCAAGATGCGGTTGAGACTCTTAATAACTGGTGTTCATGTTTGAAGCTTGCNAGAAACACTGATGATATATATAATAATATGAGGAAGGCAGCTTTTCGCCAAGATTCCAGTGACAATTTCTTATACTGTCCTAGGGCTGTAGATCTACAGCANGAGGATTTAAGACATTTTCAATGGCATTGGAGTAAAGGGGAGCCTGTAATTGTCAGCAATGCACTTGATTGTACATCTGGTTTAAGCTGGGAACCACTTGTTATGTGGCGTGCACTCCGTCAGATAGCTAATACGAAGAATTATATACAATTGGATGTGAAGATAGTTGATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAATTCTTTACTGGGTACACATGTGGTCGTAAGGATTGGCGTAATTGGCCTCAGGTATTGAAGTTAAAAGATTGGCCTCCTTCAAATTTGTTTGAGGAATGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCGTTGCCATATAAAGAATATACAGATCCTTTAGAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGACGGTTGTCTAAAGCCAGACATGGGTCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGTGGTGATTCCGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTTGTTCACCCCATCCATGATCAGACCTTTTATTTGACTGCGGAGCATAAGAGGAAGCTTAAGAAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAAGAATTCCGCCAACTCCCAATAAATCACCGGTTGGCTGAGGACAAATTGGAGGTTAAGAAAATCACTGTACATGCTATGATTGATGTGGTTAAACAGTTGGTGGAAGCGAGGTCTGGGAAAAACCAAGGTACCGATGTAAAATTGGAAGCATAAATTTGAGTCGCTTACTCAGGAGGGGTGATCTTGGGTTCTTTATATCACGACTGTAAGAATGTTTCCATATTTTGTTTTCTCTGGCACACCTCGATGAGGTACTTTTGAAACATTATATGCTGACTTGCAGTTGTAATGGTGTACATGTAATTATCACCACTAGTATATCTAGACATCTAGGGTGCTAATTCTCATGCACTTTTTGAAACATTATATGCTCACTTGTACTGGTGTACATATAAGTATCACCACTTGTATACCTATGGTGCTAATTATCAGGCTGATTCACGTTCACGGGATGATGCTGGTGTGAGAATTATTGTATTTAATTGAACTTCTGAATGAATATCTGATGAGATTCTAAGCTGCTTTTGTTGCATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	72882	82740	-

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009431.1	PF02373.17	JmjC	828	889	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.086
SRR1783600	control	14.109
SRR1783602	moderate drought stress	17.977
SRR1811619	moderate drought stress	17.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.018
DRR006520	Root Summer glycyrrhizin high producing strain	14.989
DRR006521	Root Winter glycyrrhizin high producing strain	23.397
DRR006522	Root Winter glycyrrhizin high producing strain	22.759
DRR006523	Root Summer glycyrrhizin low producing strain	17.219
DRR006524	Root Summer glycyrrhizin low producing strain	17.195
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.317
SRR2868004	Drought Stress (root)	23.798
SRR2967015	Control (root)	25.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.559
SRR9715740	Leaf	8.247
SRR9715741	Leaf	7.830
SRR9715739	Root	4.050
SRR9715742	Root	18.483
SRR9715743	Root	17.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.188
SRR8749028	MeJA induced 9h	37.994
SRR8749029	MeJA induced 9h	17.849
SRR8749030	Uninduced	2.732
SRR8749031	Uninduced	1.561
SRR8749032	Uninduced	2.318

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.700
SRR8400027	Control - Root	36.541