Gene detail information of Glyur000113s00009424 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08305.1 | 4.00E-177 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003555200.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g08305-like [Glycine max] |
| Swissprot | tr|P0C8Q7|PP369_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g08305 |
| trEMBL | tr|K7N2R3|K7N2R3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G23811.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00113 | 52124 | 53701 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000113s00009424.1 | PF01535.15 | PPR | 54 | 84 | 2.90E-05 |
| Glyur000113s00009424.1 | PF01535.15 | PPR | 127 | 153 | 0.0089 |
| Glyur000113s00009424.1 | PF01535.15 | PPR | 155 | 185 | 4.20E-08 |
| Glyur000113s00009424.1 | PF01535.15 | PPR | 187 | 213 | 3.30E-08 |
| Glyur000113s00009424.1 | PF01535.15 | PPR | 259 | 280 | 0.12 |
| Glyur000113s00009424.1 | PF13041.1 | PPR_2 | 287 | 334 | 5.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.593 |
| SRR1783600 | control | 0.582 |
| SRR1783602 | moderate drought stress | 0.817 |
| SRR1811619 | moderate drought stress | 0.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.849 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.800 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.522 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.002 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.524 |
| SRR2868004 | Drought Stress (root) | 1.244 |
| SRR2967015 | Control (root) | 1.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.413 |
| SRR9715740 | Leaf | 0.327 |
| SRR9715741 | Leaf | 0.610 |
| SRR9715739 | Root | 0.469 |
| SRR9715742 | Root | 1.057 |
| SRR9715743 | Root | 1.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.266 |
| SRR8749028 | MeJA induced 9h | 2.454 |
| SRR8749029 | MeJA induced 9h | 2.819 |
| SRR8749030 | Uninduced | 0.723 |
| SRR8749031 | Uninduced | 1.090 |
| SRR8749032 | Uninduced | 1.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.606 |
| SRR8400027 | Control - Root | 1.678 |