Gene detail

Gene detail information of Glyur000113s00009421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50320.1	2.00E-46	thioredoxin X
NR	AFK34349.1	1.66E-85	unknown [Lotus japonicus]
COG	YP_007111152.1	6.00E-31	thioredoxin [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q8LD49\|TRXX_ARATH	5.00E-60	Thioredoxin X, chloroplastic (Precursor)
trEMBL	tr\|I3S257\|I3S257_LOTJA	6.00E-86	Uncharacterized protein {ECO:0000313\|EMBL:AFK34349.1}

Sequence

Transcript Sequence

>Glyur000113s00009421.1
CGAAATTATTCGCATTTGGTGGTGGTACTGGTACATGTCATGTGGCCAGAAATTAACAAAAGATAATGTGTTGTTGATATTTGGGTAGTCATCACTCAGTCTCTCCATTATCTATCATTTCCTACTGCGATTGGGTTTGGGTTTGGCTTCATTTGTAGAAATTGAAGTCAAAACAAAACTGTTACGAACAATGGACACCGTCATCTCCTCCAGTTCAGCATCACTCCCTGCGGTTTCGGTTCGTACAGTTGCTGCTTCCATCTCTGCATCCGCATCTCTTCCCCTGCCGCCTCACTGTCACTGGTCCGCCCCCAGGCAGAGGCTCTACTACTCTGGAAGAAGAAGAAGTAGAAGAAGAAGGTTCTGGAACTCTTCTTCTTCTTCTTCTTCTGCGGTTCCTCAGTTTACAGTGACTTGCGGTGCGGGTATCACGGAAATCAATGAGAGCCAGTTCAAAGACACCGTGTTGAAGGCTAACCGTCCGGTTCTCGTCGAGTTCGTCGCTAATTGGTGCGGCCCTTGCCGTTTGATCGCTCCCGCTATGGAATCCCTAGCTCAGGAATATGAAGACAGATTAACAGTTGTAAAGATTGATCATGATGCCAACCCACGGCTAATTGAAGAGTATAAAGTTTATGGACTGCCAACCTTGNTACTCTTCAAGAACGGGCAGGAAGTTCCAGAAAGCAGGAGGGAAGGTGCAATTACAAAAGTGAAACTTAAAGAGTATCTGGATGCTTTATTGGAATCCATATCAGTTCCATAGCCATTCATCATATATAAGTATGATTCAAAATCAAAATTTGTGGCCTTTTNTGGGAAACTCGTGACATGGGAAACACACCTATTTCTGTTCCATATCTGGTTTGACGGTTTAACAGGCTTTTTTACACTTTCAATCCCTTGTATAATCTATATCATTTCTGAAGCTGCAAATACAGCATATTGTGGTGAAGGAAGGTTGTGCTAAAGTGCCTCTAGTTCTAGTACTCTCCACCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00113	38167	39932	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000113s00009421.1	PF00085.15	Thioredoxin	81	183	7.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.907
SRR1783600	control	13.108
SRR1783602	moderate drought stress	15.778
SRR1811619	moderate drought stress	15.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.395
DRR006520	Root Summer glycyrrhizin high producing strain	11.317
DRR006521	Root Winter glycyrrhizin high producing strain	9.392
DRR006522	Root Winter glycyrrhizin high producing strain	8.438
DRR006523	Root Summer glycyrrhizin low producing strain	13.522
DRR006524	Root Summer glycyrrhizin low producing strain	13.592
DRR006525	Leaf Summer glycyrrhizin high producing strain	180.832
DRR006526	Leaf Summer glycyrrhizin high producing strain	180.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.424
SRR2868004	Drought Stress (root)	12.473
SRR2967015	Control (root)	10.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.217
SRR9715740	Leaf	101.294
SRR9715741	Leaf	102.146
SRR9715739	Root	15.445
SRR9715742	Root	9.171
SRR9715743	Root	11.155

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.882
SRR8749028	MeJA induced 9h	18.491
SRR8749029	MeJA induced 9h	16.778
SRR8749030	Uninduced	8.558
SRR8749031	Uninduced	4.231
SRR8749032	Uninduced	4.948

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.798
SRR8400027	Control - Root	12.701