Gene detail information of Glyur000112s00012344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44790.1 | 4.00E-76 | ChaC-like family protein |
| NR | XP_007141060.1 | 4.39E-118 | hypothetical protein PHAVU_008G163900g [Phaseolus vulgaris] |
| COG | YP_572237.1 | 9.00E-42 | ChaC-like protein [Chromohalobacter salexigens DSM 3043] |
| trEMBL | tr|V7B5F1|V7B5F1_PHAVU | 2.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW13054.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00112 | 308091 | 312593 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000112s00012344.1 | PF04752.7 | ChaC | 3 | 179 | 4.20E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.939 |
| SRR1783600 | control | 6.993 |
| SRR1783602 | moderate drought stress | 3.863 |
| SRR1811619 | moderate drought stress | 3.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.683 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.329 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.270 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.520 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.969 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.436 |
| SRR2868004 | Drought Stress (root) | 23.630 |
| SRR2967015 | Control (root) | 21.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.729 |
| SRR9715740 | Leaf | 32.762 |
| SRR9715741 | Leaf | 17.975 |
| SRR9715739 | Root | 3.818 |
| SRR9715742 | Root | 6.642 |
| SRR9715743 | Root | 6.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.326 |
| SRR8749028 | MeJA induced 9h | 7.650 |
| SRR8749029 | MeJA induced 9h | 11.688 |
| SRR8749030 | Uninduced | 3.973 |
| SRR8749031 | Uninduced | 1.528 |
| SRR8749032 | Uninduced | 2.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.475 |
| SRR8400027 | Control - Root | 31.839 |