Gene detail

Gene detail information of Glyur000112s00012340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08290.1	2.00E-83	nodulin MtN21 /EamA-like transporter family protein
NR	KEH40540.1	0	auxin-induced 5NG4-like protein [Medicago truncatula]
COG	YP_007422017.1	2.00E-07	hypothetical protein HD73_2918 [Bacillus thuringiensis serovar kurstaki str. HD73]
Swissprot	tr\|Q9SUF1\|WTR31_ARATH	4.00E-118	WAT1-related protein At4g08290
trEMBL	tr\|A0A072VQX4\|A0A072VQX4_MEDTR	0	Auxin-induced 5NG4-like protein {ECO:0000313\|EMBL:KEH40540.1}

Sequence

Transcript Sequence

>Glyur000112s00012340.1
ATGGAGGAACTAACACATTGTGGGAAGGTACATTCGTGGCTCCGCAATTCAAAGGCATATCTGCTAATNATAAGCTTGCAATTTGGTTCAGCCGGCATGTATGTTATCACTATGGATGCTCTCAANAAGGGCATGAGTCATTATGTGTTCGTCGTTTACCGTAACATAATCGCCACTCTAGCTCTTGCTCCCTTCGCATTTTTTCTCGAAAGGAAAATTAGGCCCAAGATGACACTTCGGATATTTTCAGAAATTACGGCAGTGGCTTTTGTCGAGATAATACTTGATCAATGCTTCACCTTCTTGGGGATGAAGCTAACATCAGCATCTTTTGCATCTGCCGTGATGAATTCCGTACCATCCATTACCTTTGTGCTTGCAATCATTTTTCGATTGGAACGCATGAGAATTAAGGACAGAGGATGCCAAGCCAAGGTGATTGGGACTGCGGTAACTCTTGGAGGAGCATTTCTAATGGCACTGTACAAAGGCCCAGTTCTTGGTGTTGGTGGGTCATCAACGAGCCATGTGGGCCAGCCTGAGAATGTGAACGACCCCACTGGGGACCACTGGCTCATTGGTGCTTGTTTCATCCTCATTGGTTGTGCAGGCTTCTCCGCCTTCTACATACTTCAAGCCACAACAATAAGAAAGTACCCAGCAGAGATGTCACTAGCCACGTGGATTTGCTTCATTGGTGCACTTCAAAGCGGTGCAGTAACTCTTTTCATGGAGCGCAATAACCCTGAAGCCTGGTCTCTAGGCTTGGATTCTAGGCTCTTTGCTTCAGCCTACTCGGGAATAGTAACTTCAGCAATCCAATTTTATGTGCAAGGCACGGTTATTAAAACTATGGGCCCAGTTTTTGTGACTGCTTTTAATCCCTTGCGTATGATCATAGTCACGGCCTTGGCATGCATCCTCCTCTCNGAGAAACTCCACCTTGGAAGCATTGTTGGAGGAGTCATCGTGGTTATGGGGCTTTATCTAGTTGTATGGGGCAAATCTAAAGAACAAAAATGTGTGATGCCACCATCCCCAGAGAAAGGCCAACAACAACTACCAGTTACTGTGCCCAAAATTGAAGGCAATGATGATAATAATAATAAAACTCAATTGGTCATAATTGGAGATAAAACGACCAGCGATGTGGAAGTGGGTGGATCAAGCACACAAAGCCGGTGACCACTATCAAATTAAGTGCACCATATGTTAGGATAATATCCATTTCCATATATATAGTTACATTGGCCTAGGACCATTGGCAATGTGTGGTGAATTGTAACTTTTTACATGTTTCAGAAATCCTTTCCCAAGTTTTGATGATTTTGTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	280274	283487	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012340.1	PF00892.15	EamA	30	159	1.40E-12
Glyur000112s00012340.1	PF00892.15	EamA	207	332	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.609
SRR1783600	control	0.577
SRR1783602	moderate drought stress	0.442
SRR1811619	moderate drought stress	0.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.648
DRR006520	Root Summer glycyrrhizin high producing strain	0.644
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	6.654
DRR006524	Root Summer glycyrrhizin low producing strain	6.831
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.653
SRR2868004	Drought Stress (root)	46.367
SRR2967015	Control (root)	43.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.121
SRR9715740	Leaf	0.603
SRR9715741	Leaf	0.126
SRR9715739	Root	1.283
SRR9715742	Root	5.587
SRR9715743	Root	5.070

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.025
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.561
SRR8400027	Control - Root	3.480