Gene detail

Gene detail information of Glyur000112s00012335

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03960.1	0	TCP-1/cpn60 chaperonin family protein
NR	KHN00674.1	0	T-complex protein 1 subunit theta [Glycine soja]
COG	NP_579703.1	3.00E-91	thermosome, single subunit [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q94K05\|TCPQ_ARATH	0	T-complex protein 1 subunit theta {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|I1JD52\|I1JD52_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G07910.1}

Sequence

Transcript Sequence

>Glyur000112s00012335.1
CGAACTTTCTAGGGCTCTCGGTGCTGTCTACTCTAGTTGAAGGCTTGAAGCGGAAGAAACAAGTAGCCAAAGGTACCCATTTCGTGGGTTTAGTAATAATATTAGAGCACAGGGTTTTTGCCACCTTCTCTTCCACTCGCAGCNATTCAGAACAGAAACACGAACACGAAGAGTAACTAAGCAAGCGTAACCAAACATGGGGATCAACTTCCAGCCATATGGGATTCAATCGATGCTCAAAGAGGGNCACAAGCACCTCTCTGGTCTCGACGAAGCCGTTCTCAAAAACATCGACGCCTGCAAACAACTCTCCACCATCACCCGCACTTCCCTCGGCCCCAACGGGATGAATAAGATGGTCATTAACCATTTGGACAAGCTTTTTGTGACCAATGATGCCGCCACCATTGTCAACGANCTCGAGGTTCAGCATCCCGCCGCCAAGATTCTGGTCTTGGCTGGGAAGGCTCAGCAGGAGGAGANTGGGGATGGGGCCAATTTGACTATCTCGTTCGCCGGGGAGCTTCTGCAGGGTGCGGAGGAGCTCATTAGGATGGGTCTGCACCCGAGTGAGATCATCAGTGGATACATCAAGGCCATTAATAAGACTGTTGAAATATTGGACGAACTTGTTGTGGATGGTTCAGAGAATATGGATGTCCGTGATAAGGAGCAAGTTATTNCTCGAATGAAAGCTGCTGTTGCTAGCAAGCAATTTGGTCAAGAAGATACTATATGCTCCCTTGTTGCTGATGCATGCATTCAAGTGTGTCCAAAAAACCCTNTAAACTTTAATGTGGACAATGTTCGTGTTGCAAAGCTCTTGGGAGGAGGCTTGCGTAACAGTACTGTTGTTCGGGGAATGGTTTTGAAAAATGATGCTGTTGGTACTATAAAGAGAATAGAAAAGGCAAAGGTTGCTGTGTTTGCTAGCGGTGTTGATTCATCTGCAACTGAAACTAAAGGAACTGTCCTCATACATACGGCTGAGCAGCTAGAAAATTATTCAAAAACTGAAGAGGCTAAAGTAGAGGAGCTCATCAAGGCAGTAGCTGATTCTGGTGCCAAAGTGGTTGTAAGTGGAGGGGCAGTAGGAGAGATGGCTTTGCATTTTTGTGAGCGTTACAAGCTTATGGTTTTGAAAATCAGTTCTAAGTTTGAACTACGTCGATTTTGTCGTACAACTGGTGCTGTTGCTATGCTGAAACTTAGCCAACCAAACCCTGATGATCTTGGATATGTTGATTCTGTTTCAGTTGAGGAAATTGGCGGAGTCACGGTGGCCATTGTTAAAAATGAAGAAGGTGGAAATTCCGTATCCACTGTTGTCTTAAGAGGAAGCACTGATAGTGTACTAGATGATCTTGAAAGAGCAGTTGATGATGGAGTGAACACTTACAAGNTGATTTCTGGTGTTGCATGCTTTAACAAGTTGATCTTGAAAGTCAATCTTGTTAATAGTATGGCTTCTGCAAACATACAGATTGCCATGTGCAGNGATAGCCGTATTGTACCTGGAGCTGCAGCAACNGAAATTGAGCTAGCTAAGAGGGTGAAAGATTTTTCTTTCAAGGAGACAGGGTTGGATCAGTATGCCATAGCAAAATTTGCTGAAAGTTTTGAAATGATTCCTAGAACATTGGCTGAGAATGCTGGGCTAAATGCAATGGAGATTATATCTTCTCTATACGCAGAACATGCATCTGGAAACACTAAAGTTGGCATTGATTTGGAAGAGGGTGCTTGTAAGGATGTCTCAACCACAGGCGTTTGGGATCTCCATGTGACTAAGTTCTTTGCTCTTAAATATGCTGCTGATGCTGCATGCACTGTACTACGGGTGGACCAGATTATAATGGCGAAACCGGCTGGGGGGCCCAGGAGACCGCAACCTGCTGGCATGGATGAAGACTAACGTTGTGAGAACTGACTCTTGCTTTGGTCCATGTTTGTTTCTCTAACATGATGTCCTCCACTTCCACTTCGCGACTTGGCTTTGGGCATCTTGTTTTAATTTAGTAATGGCACCTTACAAATTTAAAATTTTGATTTTCCATGAAATATAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	239389	246806	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012335.1	PF00118.19	Cpn60_TCP1	38	403	1.40E-92
Glyur000112s00012335.1	PF00118.19	Cpn60_TCP1	431	557	5.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.250
SRR1783600	control	6.306
SRR1783602	moderate drought stress	7.346
SRR1811619	moderate drought stress	7.355

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.561
DRR006520	Root Summer glycyrrhizin high producing strain	15.477
DRR006521	Root Winter glycyrrhizin high producing strain	8.191
DRR006522	Root Winter glycyrrhizin high producing strain	7.820
DRR006523	Root Summer glycyrrhizin low producing strain	17.596
DRR006524	Root Summer glycyrrhizin low producing strain	17.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.523
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.267
SRR2868004	Drought Stress (root)	7.886
SRR2967015	Control (root)	6.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.944
SRR9715740	Leaf	2.919
SRR9715741	Leaf	0.554
SRR9715739	Root	3.624
SRR9715742	Root	1.686
SRR9715743	Root	2.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.267
SRR8749028	MeJA induced 9h	13.507
SRR8749029	MeJA induced 9h	17.465
SRR8749030	Uninduced	1.746
SRR8749031	Uninduced	0.653
SRR8749032	Uninduced	1.304

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.559
SRR8400027	Control - Root	7.829