Gene detail information of Glyur000112s00012333 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01340.1 | 5.00E-53 | |
| NR | KEH40549.1 | 1.12E-97 | plastid movement impaired protein [Medicago truncatula] |
| Swissprot | tr|Q6NLC8|Y1648_ARATH | 4.00E-43 | Uncharacterized protein At1g66480 |
| trEMBL | tr|A0A072VEV4|A0A072VEV4_MEDTR | 4.00E-98 | Plastid movement impaired protein {ECO:0000313|EMBL:KEH40549.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00112 | 220261 | 222162 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000112s00012333.1 | PF14009.1 | DUF4228 | 1 | 181 | 8.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.408 |
| SRR1783600 | control | 6.392 |
| SRR1783602 | moderate drought stress | 6.400 |
| SRR1811619 | moderate drought stress | 6.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.864 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.921 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.319 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.346 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.182 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 96.812 |
| SRR2868004 | Drought Stress (root) | 71.764 |
| SRR2967015 | Control (root) | 56.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.896 |
| SRR9715740 | Leaf | 1.241 |
| SRR9715741 | Leaf | 3.001 |
| SRR9715739 | Root | 6.140 |
| SRR9715742 | Root | 9.831 |
| SRR9715743 | Root | 10.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.756 |
| SRR8749028 | MeJA induced 9h | 1.439 |
| SRR8749029 | MeJA induced 9h | 3.414 |
| SRR8749030 | Uninduced | 1.744 |
| SRR8749031 | Uninduced | 1.737 |
| SRR8749032 | Uninduced | 5.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 92.245 |
| SRR8400027 | Control - Root | 69.521 |