Gene detail

Gene detail information of Glyur000112s00012331

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01410.1	8.00E-115	NHL domain-containing protein
NR	XP_004498321.1	0	PREDICTED: uncharacterized protein LOC101508135 [Cicer arietinum]
COG	YP_005080858.1	7.00E-23	hypothetical protein PSE_2326 [Pseudovibrio sp. FO-BEG1]
trEMBL	tr\|A0A072VG18\|A0A072VG18_MEDTR	0	SMP-30/gluconolaconase/LRE-like region protein {ECO:0000313\|EMBL:KEH40551.1}

Sequence

Transcript Sequence

>Glyur000112s00012331.1
ATGCACTCATCCAAACACTCCTTTACCACTTACCCAACCACCGCCACCATNCTCCTCTTCCTCCTCGTCGAGATTTCAACGCCGATGACAGTTCTCGCCGGAGACCCCCACGTCGTCAATTTCCGATCACGAAACCTCTACCCGGAAGGCCTCACGTGGGACCCGACAGGGCAGCACTTCCTAGTGGGATCCCTCCACGACCGCACCATCTCCTCTGTCTCGGACGCCGGCGTCGTCGAAACCCTAATCTCCGACCCCTCCCTCCCGGTAAACGTCACCATCCTTGGGCTCACCGTCGATTCCCGCAGCAACCGCGTCCTCGCCGTGCTCCACGCCATAGAACCCCTCCCTCCCTTCGACGCCCTCGCCGCCTACGACATCCGCACCCGACGCCGCCTCTTCCTCTCCCTCCTTCCCACCGCCGATTCCTCCGAAAGCCCCATCGCAAACGACGTCGCAGTGGACCCCAAGGGGAACGCTTACGTCACCAACNCCGCGGGNAACTACATCTGGAAGGTCAACTCAAACGGCGAGGCCTCGATCTTCTCAAACTCCACGAGGTTCACGGAGTATCCCGTGGACCGCGAAGCATCGTATAGTTTCTGCGGCCTCAACGGAATTGCTTACGTCAGCAGCGGCGGTTACCTCCTGGTGGTGCAATCCAACACGGGGAAGATGTTCAAAGTCGANGCGGAAGACGGAACCGCGAGGCTCGTGCTACTCAACGAGGATCTAACGGCACCTGACGGCGTCGCTTTGAGGAGTGACGGCGTCGTTTTGGTGGTTACACCAGAGGTCAATAAGTTGTGGTTCCTGAAGAGCAATGACGGGTGGGGGGAGGGTGTGGTGTTTGACAAAATTGACCTCGACAAGGAGGGGTACCCTACTTCGGTTGTCGCGAGGGAGAGGGATAGGGCGTATGTGCTGTACGGGTATGTGGATGAGGGTATTTTGGGGAATTCGGGGAGGGAGAGTTTTAGAATTGAGGAGGCGAGGTCCCCGAAGGAGGGGCAGGATGAGAATGTTTGGATGTATGTGATGGTTGGAATCGGGTTGGCCTATTTCTTGTATTGGAGGTTCCAGATGGGACAGCTAGTGAAGAACATGGACAAGAAGATNAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00112	207773	208897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000112s00012331.1	PF08450.7	SGL	48	307	1.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.646
SRR1783600	control	22.090
SRR1783602	moderate drought stress	26.149
SRR1811619	moderate drought stress	25.311

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.695
DRR006520	Root Summer glycyrrhizin high producing strain	23.630
DRR006521	Root Winter glycyrrhizin high producing strain	18.834
DRR006522	Root Winter glycyrrhizin high producing strain	17.857
DRR006523	Root Summer glycyrrhizin low producing strain	39.172
DRR006524	Root Summer glycyrrhizin low producing strain	39.879
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.784
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.674

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.215
SRR2868004	Drought Stress (root)	12.489
SRR2967015	Control (root)	17.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.793
SRR9715740	Leaf	7.442
SRR9715741	Leaf	4.330
SRR9715739	Root	14.178
SRR9715742	Root	15.735
SRR9715743	Root	15.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.202
SRR8749028	MeJA induced 9h	15.980
SRR8749029	MeJA induced 9h	9.933
SRR8749030	Uninduced	1.828
SRR8749031	Uninduced	1.198
SRR8749032	Uninduced	6.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.631
SRR8400027	Control - Root	7.419